PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Spipo24G0031000

Organism

Spirodela polyrhiza

Taxonomic ID

29656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela

Family

FAR1

Protein Properties

Length: 733aa MW: 80980.9 Da PI: 7.582

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Spipo24G0031000	genome	MIPS/IBIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	69.2	9.7e-22	92	180	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskr.ngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 +fYneYA+++GF r+ +s++sk ++ ++++fvCskeg +++ + + ++r+r + r gC+a ++v ++ +++w+v+kle+ H+H l Spipo24G0031000 92 NFYNEYARRLGFPFRVGRSRRSKGvQEVLIMKRFVCSKEGVYRKKASGEGVRKRERISMREGCRAFMEVIRD-KDRWVVSKLETAHTHVL 180 6*******************761556799*********9999999**************999.9************87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.6E-17	92	180	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	7.9E-28	273	364	IPR018289	MULE transposase domain
Pfam	PF04434	5.4E-9	552	587	IPR007527	Zinc finger, SWIM-type
PROSITE profile	PS50966	11.387	552	588	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	6.1E-7	563	590	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 733 aa Download sequence Send to blast
MSAGAGFLRL MMEGAKSDGD DLMDDDYVER ILMEANARPG EEVSDDGDHR FPPAAPPAEA 60 AKAAAAEPPG GGGGVAEPFV GMEFESDEAA KNFYNEYARR LGFPFRVGRS RRSKGVQEVL 120 IMKRFVCSKE GVYRKKASGE GVRKRERISM REGCRAFMEV IRDKDRWVVS KLETAHTHVL 180 GTCSRAGYLR ARGFIDAAER ATIVASDATT LLRQTAFGEG GDAQGLLDYF RRRQAENPGF 240 FYALQVDNRS CVTNAFWADA RARTAYACFG DAVTFDTTYK KNKYMLPFVA FAGVNHHLQP 300 VIFGCALLID ETEFSFAWLF ETWLEAMGGR PPASLTSDQN RAMAAAVARV FPGTRHRFCK 360 WLILSRTKQK LASAYAAHPT LREELESCVI HSETVRSFES SWVAIVDRYD LRKNTWLQAL 420 FNIRQRWVPL YLRDAFFAEV SPAQKLETVN DVYKRYFNTK TSLKVFLTQF ELAMAARHEK 480 EAAADCETLL RRPALKTASP IEKQAAEVYT ATLFERFQDE FVESLAYNAY KIKDGAICKY 540 SVARDEDSLD NFVVSLDTGK RSATCSCGKF EFAGILCRHV LGVLLMVDLR VLPDDCFLPR 600 WTRNAKSRAS SLGSAGGADA AAQGTMASRY NDLCQDAIRL AEKGASSAEV YKVAKAAMDK 660 AFSEILAAES ILTRGAAQRD SININEEITI DDASASAAAA AAAAAEPSLQ QDPQRKVTNL 720 LGQLLGSTWS PM*

Sequence ? help Back to Top

Protein Sequence Length: 733 aa Download sequence Send to blast

MSAGAGFLRL MMEGAKSDGD DLMDDDYVER ILMEANARPG EEVSDDGDHR FPPAAPPAEA  60
AKAAAAEPPG GGGGVAEPFV GMEFESDEAA KNFYNEYARR LGFPFRVGRS RRSKGVQEVL  120
IMKRFVCSKE GVYRKKASGE GVRKRERISM REGCRAFMEV IRDKDRWVVS KLETAHTHVL  180
GTCSRAGYLR ARGFIDAAER ATIVASDATT LLRQTAFGEG GDAQGLLDYF RRRQAENPGF  240
FYALQVDNRS CVTNAFWADA RARTAYACFG DAVTFDTTYK KNKYMLPFVA FAGVNHHLQP  300
VIFGCALLID ETEFSFAWLF ETWLEAMGGR PPASLTSDQN RAMAAAVARV FPGTRHRFCK  360
WLILSRTKQK LASAYAAHPT LREELESCVI HSETVRSFES SWVAIVDRYD LRKNTWLQAL  420
FNIRQRWVPL YLRDAFFAEV SPAQKLETVN DVYKRYFNTK TSLKVFLTQF ELAMAARHEK  480
EAAADCETLL RRPALKTASP IEKQAAEVYT ATLFERFQDE FVESLAYNAY KIKDGAICKY  540
SVARDEDSLD NFVVSLDTGK RSATCSCGKF EFAGILCRHV LGVLLMVDLR VLPDDCFLPR  600
WTRNAKSRAS SLGSAGGADA AAQGTMASRY NDLCQDAIRL AEKGASSAEV YKVAKAAMDK  660
AFSEILAAES ILTRGAAQRD SININEEITI DDASASAAAA AAAAAEPSLQ QDPQRKVTNL  720
LGQLLGSTWS PM*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008785346.1	0.0	protein FAR1-RELATED SEQUENCE 5-like
Refseq	XP_026659332.1	0.0	protein FAR1-RELATED SEQUENCE 5-like
Refseq	XP_026659336.1	0.0	protein FAR1-RELATED SEQUENCE 5-like
Refseq	XP_026659343.1	0.0	protein FAR1-RELATED SEQUENCE 5-like
Refseq	XP_026659346.1	0.0	protein FAR1-RELATED SEQUENCE 5-like
Refseq	XP_026659349.1	0.0	protein FAR1-RELATED SEQUENCE 5-like
Refseq	XP_026659352.1	0.0	protein FAR1-RELATED SEQUENCE 5-like
Refseq	XP_026659354.1	0.0	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A1D1XKM7	0.0	A0A1D1XKM7_9ARAE; Protein FAR1-RELATED SEQUENCE 5
STRING	XP_008785341.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18	32	967

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-145	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Spipo24G0031000