PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo24G0008400
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family WRKY
Protein Properties Length: 467aa    MW: 50311.2 Da    PI: 6.5145
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo24G0008400genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY1048.3e-33204260259
                      --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      dDgynWrKYGqK+vkgse+prsYY+Ct+++Cpvkkkvers  d++v+ei+Y+geHnh+
  Spipo24G0008400 204 DDGYNWRKYGQKVVKGSECPRSYYKCTHSKCPVKKKVERSL-DGQVTEIIYKGEHNHQ 260
                      8****************************************.***************8 PP
2WRKY106.21.7e-33364422159
                      ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      ldDgy+WrKYGqK+vkg+ +prsYY+Cts+gC+v+k+ver++++pk+v++tYeg+Hnh+
  Spipo24G0008400 364 LDDGYRWRKYGQKVVKGNSNPRSYYKCTSPGCNVRKQVERASTNPKAVITTYEGKHNHN 422
                      59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.807.6E-30190262IPR003657WRKY domain
SuperFamilySSF1182903.4E-26201262IPR003657WRKY domain
SMARTSM007743.8E-36203261IPR003657WRKY domain
PROSITE profilePS5081123.904204262IPR003657WRKY domain
PfamPF031061.4E-25204260IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.2E-36349424IPR003657WRKY domain
SuperFamilySSF1182904.84E-29356424IPR003657WRKY domain
PROSITE profilePS5081136.655359424IPR003657WRKY domain
SMARTSM007747.1E-39364423IPR003657WRKY domain
PfamPF031066.8E-26365421IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 467 aa     Download sequence    Send to blast
MAEEEGGGAS RAAPPRTGGG VTSLSPMTLV SSFFAEDSES DCRSFSQLLA GAMASPAAPI  60
LGRMQWSYPT AQDHGGKEAA PLEGKENDGA APPFFTMPQG LSPGALLDSP SLFTPRSGPF  120
GISHQEALAH VTAQASQVAH STSHVQMPVE TSADASWAHP NSSAVGSSLL EQKKASTSVS  180
ETAEGSQSRQ RAQAASIVID KPSDDGYNWR KYGQKVVKGS ECPRSYYKCT HSKCPVKKKV  240
ERSLDGQVTE IIYKGEHNHQ RPPANKRSRE GGLGEPNGNM NLGDNSEAGF QDDEPLHASS  300
EQPSGSGDDE EVDDFEERTA EGCDAELDPK RRKLQTGAIE SSSSQRTVTE PRIIVQTTSE  360
VDLLDDGYRW RKYGQKVVKG NSNPRSYYKC TSPGCNVRKQ VERASTNPKA VITTYEGKHN  420
HNVPAARNSS HKTTEGSSAV PEGKDFRSND QRHGTFLQMK QERELT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-38204425878Probable WRKY transcription factor 4
2lex_A1e-38204425878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00260DAPTransfer from AT2G03340Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid and during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010258724.11e-156PREDICTED: probable WRKY transcription factor 4
SwissprotQ9ZQ701e-115WRKY3_ARATH; Probable WRKY transcription factor 3
TrEMBLA0A1U7ZY161e-155A0A1U7ZY16_NELNU; probable WRKY transcription factor 4
STRINGXP_010258724.11e-156(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP134538122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13960.11e-117WRKY DNA-binding protein 4
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]