PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo23G0035500
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family NF-X1
Protein Properties Length: 716aa    MW: 78489.9 Da    PI: 8.1692
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo23G0035500genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X116.42e-05241265119
         zf-NF-X1   1 CG......kHkCqklCHeGpCppCp 19 
                      CG       H+C ++CHeGpCppC+
  Spipo23G0035500 241 CGklleckTHRCTEKCHEGPCPPCR 265
                      666666668***************6 PP
2zf-NF-X1186.3e-06407426120
         zf-NF-X1   1 CGkHkCqklCHeGpCppCpq 20 
                      CG+H C++ C+ G+CppCp+
  Spipo23G0035500 407 CGRHACKRRCCDGNCPPCPE 426
                      ******************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500168.63687152IPR019787Zinc finger, PHD-finger
SuperFamilySSF578509.89E-789155No hitNo description
PROSITE profilePS500898.87590150IPR001841Zinc finger, RING-type
PROSITE patternPS01359090149IPR019786Zinc finger, PHD-type, conserved site
PfamPF014220.022195212IPR000967Zinc finger, NF-X1-type
SMARTSM004380.032195213IPR000967Zinc finger, NF-X1-type
CDDcd060081.45E-8237285No hitNo description
PfamPF014227.1E-4241265IPR000967Zinc finger, NF-X1-type
SMARTSM004380.0014247266IPR000967Zinc finger, NF-X1-type
CDDcd060085.37E-7290333No hitNo description
PfamPF014220.024300318IPR000967Zinc finger, NF-X1-type
SMARTSM004380.0038300319IPR000967Zinc finger, NF-X1-type
CDDcd060086.62E-7344393No hitNo description
PfamPF014220.26354373IPR000967Zinc finger, NF-X1-type
SMARTSM004382.1354374IPR000967Zinc finger, NF-X1-type
CDDcd060081.02E-7397445No hitNo description
PfamPF014220.0024407425IPR000967Zinc finger, NF-X1-type
SMARTSM004380.011407426IPR000967Zinc finger, NF-X1-type
CDDcd060083.36E-9424472No hitNo description
PfamPF014220.015428452IPR000967Zinc finger, NF-X1-type
SMARTSM004380.04434453IPR000967Zinc finger, NF-X1-type
SMARTSM00438160491512IPR000967Zinc finger, NF-X1-type
PfamPF014227.2501511IPR000967Zinc finger, NF-X1-type
PfamPF0142239520529IPR000967Zinc finger, NF-X1-type
SMARTSM00438120520565IPR000967Zinc finger, NF-X1-type
PfamPF014220.35602612IPR000967Zinc finger, NF-X1-type
SMARTSM0043856602643IPR000967Zinc finger, NF-X1-type
SMARTSM004380.15656674IPR000967Zinc finger, NF-X1-type
PfamPF014228.7658673IPR000967Zinc finger, NF-X1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009651Biological Processresponse to salt stress
GO:0009908Biological Processflower development
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0042335Biological Processcuticle development
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000037Biological Processregulation of stomatal complex patterning
GO:0005634Cellular Componentnucleus
GO:0000987Molecular Functioncore promoter proximal region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 716 aa     Download sequence    Send to blast
APGFASLQRE MPTAEFPPLV RAAPTVDAIF TDSDASSSGG EEPEPAERLA AAEDSVFSAY  60
LQASGSSSGH DLAKIRSFLS SSRKSSFVAC LICLERIRPS DPAWSCSSGC YDLFHLICIQ  120
SWARQCSSLP PSSSRPSLPS STDWHCPKCR LNYPQNQIPR IYFCYCGKVE NPQPDPWIVP  180
HSCGEICGRS LRGDCGHHCL LLCHPGPCPP CPKLVTSRCF CGFTKDVRRC ALKEFSCNRP  240
CGKLLECKTH RCTEKCHEGP CPPCRVKGTY RCLCGREEAD RECCERLFQC DQPCGGFLIC  300
GKHDCSRGCH AGPCGDCPLQ GKRTCPCGKR HYEGVACDAM VPTCGSTCEK LLACNIHRCP  360
ERCHQGPCVE SCRNVLAKFC RCGGLKKEVP CFQDLICERK CQKMRDCGRH ACKRRCCDGN  420
CPPCPEICGR KLRCDNHKCP SPCHRGICAP CPLMVSISCA CGETHFEVPC GAEKEQKPPR  480
CPKPCDASRL CRHSSTCKPH RCHYGACPPC RMICEEKLSC GHTCKLRCHG PVPPPKQDFS  540
LRPRKKKQGR PTQGTPGSAC PPCQEVVLRS CLGKHIGEDR PMLCSSQVRY SCQNLCGNAL  600
DCGNHYCTKS CHALKPSLSS AAMNLGGAPP GEAPPGLTEP CEQCRLPCQK ERSPACPHPC  660
PRPCHPNDCP PCKVLVKRSC HCGSLVHVFE CIYYNSLSAD EQQRVRSCGG PCHRKL
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. May mediate E2- or E3-dependent ubiquitination. Required to gate light sensitivity during the night. Regulates the speed of the clock by acting in the feedback loop between CCA1, LHY and APRR1/TOC1. Promotes the expression of CCA1 at night but not by days. This activational effect is enhanced by interaction with ADO1/ZTL. Association with ADO1/ZTL is not leading to the degradation of NFXL2. Confers sensitivity to osmotic stress such as high salinity. Prevents H(2)O(2) production and abscisic acid accumulation. Part of a regulatory network that integrates the biosynthesis and action of abscisic acid, reactive oxygen species and cuticle components. {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:21300918, ECO:0000269|PubMed:21429190, ECO:0000269|PubMed:22073231, ECO:0000269|PubMed:22516817}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian-regulation with a peak of expression at or before dawn. Not regulated by biotic and abiotic stresses, by light and nutrient conditions or upon treatment with elicitors, chemicals, abscisic acid or phytohormones. {ECO:0000269|PubMed:21300918, ECO:0000269|PubMed:22073231}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008793296.10.0NF-X1-type zinc finger protein NFXL2
SwissprotQ9FFK80.0NFXL2_ARATH; NF-X1-type zinc finger protein NFXL2
TrEMBLA0A1D1YWK70.0A0A1D1YWK7_9ARAE; NF-X1-type zinc finger protein NFXL2
STRINGXP_008793296.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP107733537
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05660.10.0sequence-specific DNA binding transcription factors;zinc ion binding;sequence-specific DNA binding transcription factors