PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Spipo23G0034200

Organism

Spirodela polyrhiza

Taxonomic ID

29656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela

Family

S1Fa-like

Protein Properties

Length: 70aa MW: 7790.52 Da PI: 11.0744

Description

S1Fa-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Spipo23G0034200	genome	MIPS/IBIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	S1FA	108.2	4.2e-34	6	69	7	70
S1FA 7 eakGlnPGlivllvvgglllvflvgnyilyvyaqknlPPrkkkPvskkklkreklkqGvavPGe 70 ++GlnPGl+vl+vv g++lvf++gny+ly+yaq++lP rkkk +skkk+k+e lk+ +++PGe Spipo23G0034200 6 ASRGLNPGLMVLIVVVGMVLVFFIGNYALYTYAQRTLPKRKKKTISKKKMKKEMLKKAISSPGE 69 579************************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04689	1.5E-33	6	69	IPR006779	DNA binding protein S1FA

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 70 aa Download sequence Send to blast
MFNEPASRGL NPGLMVLIVV VGMVLVFFIG NYALYTYAQR TLPKRKKKTI SKKKMKKEML 60 KKAISSPGE*

Functional Description ? help Back to Top
Source	Description
UniProt	DNA-binding protein that specifically recognizes a negative element (S1F) within the RPS1 promoter. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010104121.2	5e-20	DNA-binding protein S1FA
Refseq	XP_024026346.1	5e-20	DNA-binding protein S1FA
Swissprot	Q7XLX6	1e-14	S1FA2_ORYSJ; DNA-binding protein S1FA2
TrEMBL	W9SCA3	8e-19	W9SCA3_9ROSA; DNA-binding protein S1FA1
STRING	XP_010104121.1	1e-19	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5154	35	63

Link Out ? help Back to Top
Phytozome	Spipo23G0034200

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]