PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Spipo22G0024800

Organism

Spirodela polyrhiza

Taxonomic ID

29656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela

Family

Protein Properties

Length: 921aa MW: 99377.3 Da PI: 7.5162

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Spipo22G0024800	genome	MIPS/IBIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	56.8	4e-18	340	439	1	98
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 f+kvl+ sd+++ grlvlpk +ae++ ++++e+ l+++d +g+ W +++++ +++s++yvl+ G ++ +L++gD+v+F++++ e+ Spipo22G0024800 340 FEKVLSASDAGRIGRLVLPKACAEAYfpPISQPEGLPLRIQDAKGKDWIFQFRFwpNNNSRMYVLE-GVTPCIQSMQLQAGDTVTFSRID-PEG 431 99************************555567778***********99899999999.*******************987.777 PP ..EEEEE- CS B3 91 elvvkvfr 98 +lv+++++ Spipo22G0024800 432 KLVMGFRK 439 77777665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	6.8E-30	332	446	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	4.45E-19	337	440	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	2.87E-21	338	439	No hit	No description
SMART	SM01019	8.2E-19	340	440	IPR003340	B3 DNA binding domain
Pfam	PF02362	1.9E-15	340	439	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	10.983	340	441	IPR003340	B3 DNA binding domain
PROSITE profile	PS51050	14.138	602	652	IPR011124	Zinc finger, CW-type
CDD	cd15517	3.73E-4	605	632	No hit	No description
Pfam	PF07496	4.1E-13	607	649	IPR011124	Zinc finger, CW-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010030	Biological Process	positive regulation of seed germination
GO:2000034	Biological Process	regulation of seed maturation
GO:0003677	Molecular Function	DNA binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 921 aa Download sequence Send to blast
MGLAPRSCVN AECGAAAAAG EWRKGWALRS GGFANLCGNC GMAYEQFIFC DLFHGKESGW 60 RECSSCGKRL HCGCAASRSL IVLLDNGGVQ CVNCAKNSDL NPGEVFQDSL LHLPDKGLAV 120 SGRTSRDDKS DGFAASTAGR SINCKGQSSM LLGHRDNTNG SYKHIKQEEV MLSVGDLGIT 180 RFPDINQVRN SSSQTWRRDD RKYIMTEKRS FNPTSPGCLG ISLGTSSNPA HMADACDYGG 240 NSHLSLPMSN LGAEGREQSR SQSALQEVQK GQQIHAKSLK SSLLTGSETS KESISHMRIA 300 RPPGEGRGRN HLLPRYWPRI TDQELKQISG DSNSTIVPLF EKVLSASDAG RIGRLVLPKA 360 CAEAYFPPIS QPEGLPLRIQ DAKGKDWIFQ FRFWPNNNSR MYVLEGVTPC IQSMQLQAGD 420 TVTFSRIDPE GKLVMGFRKA ANSVPLQDSQ ISAIANGNES FLSGVIENLP IVSRYSGLLQ 480 SLETIACPQS SGLPEHRIMA DRGSICLSSD NLASRLIQGL PLQPLLVPEK KRSRNIGSKS 540 KRLHIDSEDA LELKLTWEDA QDLLRAPPNA IPSIVVIEDH EFEEYEEPPV LGKKTIFTIR 600 ASGGNDQWVQ CDHCHKWRRL PAEAIVLSKW VCTDNTWEPK RSSCSAPDEM GEKEIQNLLQ 660 LNAELKKRKL STGYTPPAEE PAGLEALATL AVLGNEATQA ALSVAATTTK HPRHRPGCSC 720 IVCIQPPSGK GPKHKPTCTC NVCMTVRRRF KTLMMRKKKR QSEQEAEAHK KLHPDKDDAE 780 LGSSSQASGL PSGTAPLEAS ESGYAQDAAA AEMGDGQIDL NCRPEKGDGG GAGQTHMSMM 840 SLLQVANLPL EMYLKQNGLT SLACEQQASS SSHAAAAPRA AAESGEETAE GGHRPATAME 900 GCAMAHEGDS GCAPALGPRS *

Sequence ? help Back to Top

Protein Sequence Length: 921 aa Download sequence Send to blast

MGLAPRSCVN AECGAAAAAG EWRKGWALRS GGFANLCGNC GMAYEQFIFC DLFHGKESGW  60
RECSSCGKRL HCGCAASRSL IVLLDNGGVQ CVNCAKNSDL NPGEVFQDSL LHLPDKGLAV  120
SGRTSRDDKS DGFAASTAGR SINCKGQSSM LLGHRDNTNG SYKHIKQEEV MLSVGDLGIT  180
RFPDINQVRN SSSQTWRRDD RKYIMTEKRS FNPTSPGCLG ISLGTSSNPA HMADACDYGG  240
NSHLSLPMSN LGAEGREQSR SQSALQEVQK GQQIHAKSLK SSLLTGSETS KESISHMRIA  300
RPPGEGRGRN HLLPRYWPRI TDQELKQISG DSNSTIVPLF EKVLSASDAG RIGRLVLPKA  360
CAEAYFPPIS QPEGLPLRIQ DAKGKDWIFQ FRFWPNNNSR MYVLEGVTPC IQSMQLQAGD  420
TVTFSRIDPE GKLVMGFRKA ANSVPLQDSQ ISAIANGNES FLSGVIENLP IVSRYSGLLQ  480
SLETIACPQS SGLPEHRIMA DRGSICLSSD NLASRLIQGL PLQPLLVPEK KRSRNIGSKS  540
KRLHIDSEDA LELKLTWEDA QDLLRAPPNA IPSIVVIEDH EFEEYEEPPV LGKKTIFTIR  600
ASGGNDQWVQ CDHCHKWRRL PAEAIVLSKW VCTDNTWEPK RSSCSAPDEM GEKEIQNLLQ  660
LNAELKKRKL STGYTPPAEE PAGLEALATL AVLGNEATQA ALSVAATTTK HPRHRPGCSC  720
IVCIQPPSGK GPKHKPTCTC NVCMTVRRRF KTLMMRKKKR QSEQEAEAHK KLHPDKDDAE  780
LGSSSQASGL PSGTAPLEAS ESGYAQDAAA AEMGDGQIDL NCRPEKGDGG GAGQTHMSMM  840
SLLQVANLPL EMYLKQNGLT SLACEQQASS SSHAAAAPRA AAESGEETAE GGHRPATAME  900
GCAMAHEGDS GCAPALGPRS *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j9a_A	3e-68	318	447	2	131	B3 domain-containing transcription repressor VAL1
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	746	757	RRRFKTLMMRKK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010252057.1	0.0	PREDICTED: B3 domain-containing protein Os07g0679700-like isoform X1
Swissprot	Q6Z3U3	0.0	Y7797_ORYSJ; B3 domain-containing protein Os07g0679700
TrEMBL	A0A1D1Y2T0	0.0	A0A1D1Y2T0_9ARAE; B3 domain-containing protein Os07g0679700 (Fragment)
STRING	XP_010252057.1	0.0	(Nelumbo nucifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6519	37	48

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G32010.1	0.0	HSI2-like 1

Link Out ? help Back to Top
Phytozome	Spipo22G0024800

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]