PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo22G0011600
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family C3H
Protein Properties Length: 603aa    MW: 65670.1 Da    PI: 10.0748
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo22G0011600genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH36.39.3e-12296322127
                      --S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                      ++++ C++++rtG C yGd+C+++H++
  Spipo22G0011600 296 PGERDCDYYMRTGSCGYGDKCRYNHPR 322
                      5789*********************96 PP
2zf-CCCH37.73.5e-12344368327
                      S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                      ++ C++f++tGtCk+G++Ck++H++
  Spipo22G0011600 344 QSVCQYFMKTGTCKFGASCKYHHPR 368
                      578********************96 PP
3zf-CCCH32.91.1e-10388413227
                      -S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                      +++ C+++++tG Ck+ ++CkF+H++
  Spipo22G0011600 388 GEKDCSYYMKTGLCKFRATCKFHHPE 413
                      7889********************96 PP
4zf-CCCH35.12.2e-11545571127
                      --S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                      +++++C+++++tG C++G+ Ck+ H++
  Spipo22G0011600 545 PGQPECQYYLKTGDCRFGAACKYDHPR 571
                      5789*********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.549295323IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-6295322IPR000571Zinc finger, CCCH-type
PfamPF006422.0E-9297322IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.92E-6298323IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-5301322IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.272341369IPR000571Zinc finger, CCCH-type
SMARTSM003562.7E-6341368IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.09E-6342369IPR000571Zinc finger, CCCH-type
PfamPF006427.8E-10344368IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.4E-5346368IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.774386414IPR000571Zinc finger, CCCH-type
SMARTSM003561.2E-4386413IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-6388413IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.58E-5389413IPR000571Zinc finger, CCCH-type
SMARTSM003561.2E-5544571IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.563544572IPR000571Zinc finger, CCCH-type
PfamPF006428.7E-9546571IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.5E-5548572IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 603 aa     Download sequence    Send to blast
MGIPRNLTRR SGGRCAAASS LLSRSPTAHL HLLGPNPGRS LLLLHLPLSV ATLFVLRAVI  60
HLSWVVIALH FFEYAGLVNY AFNLCDPVGG SFRSPQSEGK YAEFLERDSN SLVISFNVLG  120
RLAHPGGPLT TNKAAALAKF LERKLQQPGG LDSIDPNVLE LAVKNAKETV KASGSSTTTG  180
RVIRHVASFD HGSTEELETR TLEKKKNKKN KKSKKKKLEM QGVPETGNLK KRKKLEKEDA  240
PERRKRKRKK KELRESNMAA GRVAQAQSPK RRPKPFWQLS MGGGSGGGEP AYPQRPGERD  300
CDYYMRTGSC GYGDKCRYNH PRSRAIGTAA ALLSGGEYPE RVGQSVCQYF MKTGTCKFGA  360
SCKYHHPRQG VPVQPIQLNS SGYPLRPGEK DCSYYMKTGL CKFRATCKFH HPELADTSMA  420
ALPPAPPFFP GVQPSSVHPP SQFPAMAGWQ MSSPGQLLPG SYIPGAYGSM LFCPGVVPWS  480
SYPPPVNPGM ASPGGQPSFQ AGPAYGMPHE LPPSVPAYPG PYQPGSSSAD PSVSGQRENS  540
FPERPGQPEC QYYLKTGDCR FGAACKYDHP RERGTLKMNY SLSPLGLPLR QVCHSDPMES  600
DK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1204217KKNKKNKKSKKKKL
2228234LKKRKKL
3230250KRKKLEKEDAPERRKRKRKKK
4231250RKKLEKEDAPERRKRKRKKK
5242247RRKRKR
6242248RRKRKRK
7242250RRKRKRKKK
8243248RKRKRK
9243250RKRKRKKK
10243251RKRKRKKKE
11244250KRKRKKK
12245249RKRKK
13245251RKRKKKE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010921758.11e-119zinc finger CCCH domain-containing protein 6
SwissprotQ5NAW21e-105C3H6_ORYSJ; Zinc finger CCCH domain-containing protein 6
TrEMBLA0A1D1Y1131e-151A0A1D1Y113_9ARAE; Zinc finger CCCH domain-containing protein 6
STRINGXP_008796231.11e-116(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27613889
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.32e-90C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Friedrichs G,Fikri M,Guo Y,Temps F
    Time-resolved cavity ringdown measurements and kinetic modeling of the pressure dependences of the recombination reactions of SiH2 with the alkenes C2H4, C3H6, and t-C4H8.
    J Phys Chem A, 2008. 112(25): p. 5636-46
    [PMID:18512897]
  3. Ning H,Gong C,Li Z,Li X
    Pressure-dependent kinetics of initial reactions in iso-octane pyrolysis.
    J Phys Chem A, 2015. 119(18): p. 4093-107
    [PMID:25868004]