PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo22G0001400
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family AP2
Protein Properties Length: 334aa    MW: 36981.6 Da    PI: 8.309
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo22G0001400genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2414.8e-1369129155
              AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng...kr..krfslgkfgtaeeAakaaiaarkkleg 55 
                      s y+GV++++++gr++A+++d  ++n+   k+  +   l  ++ +e Aa+a++ a++k++g
  Spipo22G0001400  69 SIYRGVTRHRWTGRYEAHLWDkSTWNQnqnKKgkQVLFLCAYDDEEAAARAYDLAALKYWG 129
                      57*******************766644457445667788889999**************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008477.0E-1069129IPR001471AP2/ERF domain
SuperFamilySSF541713.2E-1369139IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.1E-1270138IPR001471AP2/ERF domain
SMARTSM003806.2E-1970143IPR001471AP2/ERF domain
PROSITE profilePS5103217.55670137IPR001471AP2/ERF domain
PRINTSPR003672.4E-57182IPR001471AP2/ERF domain
PRINTSPR003672.4E-5119139IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
DAEEGADVGS NGEARPDQMY ASGCIGGVGE RLVVLTKKRG RVEMAAGCVT TAKERISRMP  60
PCAAGKRSSI YRGVTRHRWT GRYEAHLWDK STWNQNQNKK GKQVLFLCAY DDEEAAARAY  120
DLAALKYWGA GTLINFPVSD YSRDLEEMQS VSKEEYLVSL RRKSSAFSKG FPKCRVIPRH  180
PQNSQWETPL GQALSLSPLE GMTRDDEIRR KYASGFMERK IDLTPHIRWW GPNKAQQGDP  240
ADRCYPETVV VSDDLDKELH ALESAVRHTE PYQLPSLGLP SKKSSQGSLI TACGILSQSA  300
SFKNLKQSLE SCDGSGCGEN PVSDSRPMPV PPHG
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020699691.11e-113AP2-like ethylene-responsive transcription factor At2g41710
SwissprotQ8GWK27e-76AP2L4_ARATH; AP2-like ethylene-responsive transcription factor At2g41710
TrEMBLA0A1D1XYB51e-143A0A1D1XYB5_9ARAE; AP2-like ethylene-responsive transcription factor At2g41710
TrEMBLA0A1D1ZFF91e-144A0A1D1ZFF9_9ARAE; AP2-like ethylene-responsive transcription factor At2g41710
STRINGXP_008809562.11e-105(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP92003136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41710.11e-70AP2 family protein