PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Spipo21G0033300 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
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Family | NAC | ||||||||
Protein Properties | Length: 172aa MW: 19097.8 Da PI: 5.941 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 34.5 | 6.1e-11 | 63 | 118 | 1 | 49 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......leleev.ikev.diykvePwdLpk 49 lp+G++F+Ptd+el+ e+L++kv++ + ++++ i+ +i++++P++Lp+ Spipo21G0033300 63 LPAGVKFDPTDQELI-EHLEAKVSSGEskshplIDEFIPtIEGEdGICYTHPEKLPA 118 799************.99*****99996665443333333666646*********94 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.57E-10 | 57 | 120 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 10.648 | 63 | 171 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 172 aa Download sequence Send to blast |
MNPAQICSIS SCDLLDAKIG QHQRFGTKHC PGCGNELERK PKVETNEAGF GDYPCRLKDW 60 VGLPAGVKFD PTDQELIEHL EAKVSSGESK SHPLIDEFIP TIEGEDGICY THPEKLPAVR 120 PLLSVTISRT EMVVDAAVEF VESITLRGDG KDIQSGTIQF HKVVRLRWWR R* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269|PubMed:25265867, ECO:0000269|PubMed:25535195}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010244407.1 | 1e-46 | PREDICTED: uncharacterized protein LOC104588253 isoform X1 | ||||
Refseq | XP_010244410.1 | 1e-46 | PREDICTED: uncharacterized protein LOC104588253 isoform X1 | ||||
Swissprot | Q9M0F8 | 8e-42 | NAC75_ARATH; NAC domain-containing protein 75 | ||||
TrEMBL | A0A1U7YVD2 | 2e-45 | A0A1U7YVD2_NELNU; uncharacterized protein LOC104588253 isoform X1 | ||||
STRING | XP_010244406.1 | 4e-46 | (Nelumbo nucifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1453 | 38 | 117 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G29230.1 | 3e-44 | NAC domain containing protein 75 |
Link Out ? help Back to Top | |
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Phytozome | Spipo21G0033300 |
Publications ? help Back to Top | |||
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