PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo21G0028000
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family bHLH
Protein Properties Length: 357aa    MW: 38600.5 Da    PI: 9.0037
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo21G0028000genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH24.16.6e-08261301954
                      HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                       r+RR+ri +++  L++l+P        K++ a++L +A +Y+k L
  Spipo21G0028000 261 ARQRRERISERLRVLQSLVPGG-----SKMDTASMLDEAANYLKFL 301
                      69******************95.....5****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.301252301IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.95E-11258305No hitNo description
SMARTSM003539.5E-13258307IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.5E-14258311IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.0E-11260309IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.5E-5261301IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MWINQANEAG KNSLQSYSIY GDLDLAEALF RVEIPGFRPI EPRKMNRLGE MEGLPPSPSP  60
DSAEVRQVQE TMWLAALLGS PSATIGNSSP PGDQLRINVG EEEDMSAILS SCEIFPNSSS  120
SGSASSGESE ICGPRRSGEL FSRGSSSPDA ALLGVSQNRP NLKRKQRGSG FAIGASLRKE  180
TGFRISFETQ PKRAKYRMEG SGIDFRLYNG YEPDTEAIAQ VKEMIYRAAA MRPVNPGTVK  240
AVEKPKRKNV RISSDPQTVA ARQRRERISE RLRVLQSLVP GGSKMDTASM LDEAANYLKF  300
LKSQVNALET LGQGTGSAGS SNPSSSLPPS SPFDHSFPLQ TLVPQMQMGA PDLPQF*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1261266RQRRER
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010924964.11e-70transcription factor bHLH87-like
TrEMBLA0A1D1XE724e-89A0A1D1XE72_9ARAE; Transcription factor bHLH87
STRINGXP_008797919.15e-68(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP154637106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21330.12e-42bHLH family protein