PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo21G0025300
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family bHLH
Protein Properties Length: 290aa    MW: 31647.2 Da    PI: 8.6635
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo21G0025300genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.89.1e-09110154554
                      HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      h + Er+RR+++N+ f  Lr+l+ ++     ++ + a+iL+ A ++++ L
  Spipo21G0025300 110 HVMSERKRREKLNENFVALRTLISPD-----TRKDRASILTSARDCMNAL 154
                      7789*******************988.....8999********9998877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.398105154IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.2E-12109174IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.46E-10109159No hitNo description
SuperFamilySSF474591.7E-13109173IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.2E-6110154IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.0E-9111160IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MISHGRASNP HFPTPMDDDA AMATALLAVI SSSLPSSSAG PAPQRAALSS RRMAFSPYDS  60
SRAPIVDPSS CYRGQIMIKR SLAIMRHIAS MKAHTMFQES PQSVASQFPH VMSERKRREK  120
LNENFVALRT LISPDTRKDR ASILTSARDC MNALREQISC LEEKNRTLEA HLTAPEEPAD  180
GAESSGERVE IRVLRSPESS SSQVGQQIEL RVTVRVKCDP VGLLLRILGR LKAMGNLSLV  240
SMETRGFSRH GNPFGLAILK FQIEGGEWDE AAFTEAVTTA VDDGMVALR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1113118ERKRRE
2114119RKRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP101743136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56960.13e-29bHLH family protein