PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Spipo21G0020000

Organism

Spirodela polyrhiza

Taxonomic ID

29656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela

Family

WRKY

Protein Properties

Length: 497aa MW: 53605.7 Da PI: 6.7822

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Spipo21G0020000	genome	MIPS/IBIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	96.2	2.3e-30	183	242	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dg++WrKYGqK kg+++pr+YYrCt a Cpv+k+v+r+a+d +++++tYeg+Hnh+ Spipo21G0020000 183 MNDGCQWRKYGQKIAKGNPCPRAYYRCTVApACPVRKQVQRCADDMSILITTYEGTHNHP 242 58*************************99**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	8.2E-32	168	244	IPR003657	WRKY domain
SuperFamily	SSF118290	2.35E-27	176	244	IPR003657	WRKY domain
PROSITE profile	PS50811	28.461	178	244	IPR003657	WRKY domain
SMART	SM00774	1.3E-36	183	243	IPR003657	WRKY domain
Pfam	PF03106	4.9E-27	184	242	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0006952	Biological Process	defense response
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 497 aa Download sequence Send to blast
MSQNDQLETT KAEMGEVREE NERLKTILAR IMKDYQSLQM HLFDVVQQDR NKKPPVENSD 60 AHQENEESEL VSLSLGSSSR DHRKGEKTAI TPETKEDERM KGDLSLGLNS RFDNCGAPSA 120 EGPSNSSGET GLEEPREEDG AGEPWHLNKS LKMSRPGDED LSHRVPVKNA RVSVRARCDT 180 PTMNDGCQWR KYGQKIAKGN PCPRAYYRCT VAPACPVRKQ VQRCADDMSI LITTYEGTHN 240 HPLPVSATAM ASTTAAAASM LMSGSSVSRP AVGVSALATS PTAASNHALQ GLNFGLSDFS 300 RQRQFYLPNP SISSYSSYPT ITLDLTSPPS ASSPSLQFKK FSTARVAPTN LSFSSSEPTA 360 NPYLGYGTLP YNKNQVGFFN LGRQPQEAQL HQPFLQKTAS SAPLGPAQNP LSSTIAAATK 420 AITSDPSFQS ALAVAISSIV GGQGNQGLAD TLGQVNLKWG DQPPPMQPLE SSVNVNGCGS 480 SYLTRFGWDP YLDIQT*

Sequence ? help Back to Top

Protein Sequence Length: 497 aa Download sequence Send to blast

MSQNDQLETT KAEMGEVREE NERLKTILAR IMKDYQSLQM HLFDVVQQDR NKKPPVENSD  60
AHQENEESEL VSLSLGSSSR DHRKGEKTAI TPETKEDERM KGDLSLGLNS RFDNCGAPSA  120
EGPSNSSGET GLEEPREEDG AGEPWHLNKS LKMSRPGDED LSHRVPVKNA RVSVRARCDT  180
PTMNDGCQWR KYGQKIAKGN PCPRAYYRCT VAPACPVRKQ VQRCADDMSI LITTYEGTHN  240
HPLPVSATAM ASTTAAAASM LMSGSSVSRP AVGVSALATS PTAASNHALQ GLNFGLSDFS  300
RQRQFYLPNP SISSYSSYPT ITLDLTSPPS ASSPSLQFKK FSTARVAPTN LSFSSSEPTA  360
NPYLGYGTLP YNKNQVGFFN LGRQPQEAQL HQPFLQKTAS SAPLGPAQNP LSSTIAAATK  420
AITSDPSFQS ALAVAISSIV GGQGNQGLAD TLGQVNLKWG DQPPPMQPLE SSVNVNGCGS  480
SYLTRFGWDP YLDIQT*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	2e-21	183	244	17	77	Probable WRKY transcription factor 4
2lex_A	2e-21	183	244	17	77	Probable WRKY transcription factor 4
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator involved in the transcriptional regulation of terpene biosynthesis in glandular trichomes (PubMed:24884371). Binds to the promoter of the linalool synthase TPS5 and promotes TPS5 gene transactivation (PubMed:24884371). In association with WRKY72B, contributes to basal defense against root-knot nematodes (RKNs) and potato aphids, as well as Mi-1-mediated gene-for-gene resistance to these pests (PubMed:20409007). Both WRKY72A and WRKY72B are not required for gene-for-gene resistance mediated by Pto, another tomato R gene (PubMed:20409007). {ECO:0000269\|PubMed:20409007, ECO:0000269\|PubMed:24884371}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by infection with the root-knot nematode (RKN) Meloidogyne incognita and potato aphids. {ECO:0000269\|PubMed:20409007}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017701724.1	1e-164	probable WRKY transcription factor 72 isoform X1
Refseq	XP_017701728.1	1e-165	probable WRKY transcription factor 72 isoform X2
Swissprot	A0A3Q7GFB5	1e-113	WK72A_SOLLC; WRKY transcription factor 72A
TrEMBL	A0A1D1YDU1	1e-177	A0A1D1YDU1_9ARAE; Putative WRKY transcription factor 72 (Fragment)
STRING	XP_008809713.1	1e-164	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5047	38	62

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G15130.1	3e-68	WRKY DNA-binding protein 72

Link Out ? help Back to Top
Phytozome	Spipo21G0020000

Publications ? help Back to Top
Tomato Genome Consortium The tomato genome sequence provides insights into fleshy fruit evolution. Nature, 2012. 485(7400): p. 635-41 [PMID:22660326] Spyropoulou EA,Haring MA,Schuurink RC RNA sequencing on Solanum lycopersicum trichomes identifies transcription factors that activate terpene synthase promoters. BMC Genomics, 2014. 15: p. 402 [PMID:24884371]