PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Spipo20G0027700 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
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Family | ERF | ||||||||
Protein Properties | Length: 257aa MW: 27746.5 Da PI: 10.3081 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 61.4 | 2.1e-19 | 95 | 145 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 y+GVr+++ +g+WvAeIr p++ r+r +lg+f+ta eAa a++ a+ kl+ge Spipo20G0027700 95 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAMEAAMAYDDAAFKLRGE 145 59******9.**********955...5**************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 5.10E-31 | 94 | 153 | No hit | No description |
SMART | SM00380 | 3.0E-38 | 95 | 158 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.682 | 95 | 152 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.2E-31 | 95 | 153 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 7.85E-23 | 95 | 153 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.7E-13 | 96 | 145 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.5E-10 | 96 | 107 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.5E-10 | 118 | 134 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 257 aa Download sequence Send to blast |
MRTGAGGLTR KMAAVMDVYS SMFRTMAAEE QFFSTAGEPQ IGLSRLNPAQ LQQVQSQMAL 60 FQRKNGHQSF SLSFISPRPQ AMKNAGGGSS GAGKLYRGVR QRHWGKWVAE IRLPRNRTRL 120 WLGTFDTAME AAMAYDDAAF KLRGELARLN FPHRRRNGSP AATADTPASP LPAAVDAKLQ 180 AICRSMAGGL SPAAPPPSSA AALDKSPSES PSPPTSPEPD MGSLKFSEPA WDEAEGLLLR 240 KYPSWEIDWD AILSPN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 8e-20 | 93 | 158 | 3 | 69 | ATERF1 |
3gcc_A | 8e-20 | 93 | 158 | 3 | 69 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020687212.1 | 2e-65 | ethylene-responsive transcription factor RAP2-13-like | ||||
Swissprot | O65665 | 2e-54 | ERF60_ARATH; Ethylene-responsive transcription factor ERF060 | ||||
Swissprot | Q8H1E4 | 3e-54 | RAP24_ARATH; Ethylene-responsive transcription factor RAP2-4 | ||||
TrEMBL | A0A2I0WZ47 | 4e-64 | A0A2I0WZ47_9ASPA; Ethylene-responsive transcription factor RAP2-4 | ||||
TrEMBL | A0A427B5E5 | 2e-64 | A0A427B5E5_ENSVE; Uncharacterized protein | ||||
TrEMBL | A6YT27 | 3e-64 | A6YT27_9ASPA; DRE-binding protein DREB1 | ||||
STRING | Pavir.Da01302.1.p | 6e-62 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP382 | 35 | 203 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G78080.1 | 1e-40 | related to AP2 4 |
Link Out ? help Back to Top | |
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Phytozome | Spipo20G0027700 |
Publications ? help Back to Top | |||
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