PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Spipo20G0023900 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
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Family | Trihelix | ||||||||
Protein Properties | Length: 223aa MW: 25206.7 Da PI: 11.0621 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 63.3 | 5.7e-20 | 24 | 107 | 2 | 86 |
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergfer...spkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 W ++e+ +Li+a++e++++l+rg+lk+++Weev++++ ++ g++r s +qC++k+e+l++ry+++ ++ ++ ss++ +fd+++ Spipo20G0023900 24 WLERETALLIDAYEERWSSLKRGQLKAHQWEEVASAVaAKLGLSRpskSGTQCRHKIEKLRQRYRAELQRGGS-----SSRWTFFDRID 107 99*********************************997677887666699***************99998887.....679*****998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 6.249 | 23 | 84 | IPR017877 | Myb-like domain |
Pfam | PF13837 | 3.4E-21 | 23 | 109 | No hit | No description |
SMART | SM00595 | 3.7E-6 | 31 | 114 | IPR006578 | MADF domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 223 aa Download sequence Send to blast |
MISQEASPAA PPPARKHNGP GKPWLERETA LLIDAYEERW SSLKRGQLKA HQWEEVASAV 60 AAKLGLSRPS KSGTQCRHKI EKLRQRYRAE LQRGGSSSRW TFFDRIDRME RGPLPISVRP 120 PPPPPPPPSP PRRSGDGGDG ESAEAEEDWG RAAMQVAAAV RRFREGLGRL QKRSLEMVIE 180 MERDWTEMET RRTEMVIESQ RRLVEAIAMA FSAKKPRRSH RS* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020580937.1 | 2e-58 | trihelix transcription factor ASIL1-like, partial | ||||
TrEMBL | A0A2I0X7B4 | 1e-50 | A0A2I0X7B4_9ASPA; Uncharacterized protein | ||||
STRING | GSMUA_Achr6P04170_001 | 9e-49 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP10078 | 29 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G44730.1 | 4e-22 | Trihelix family protein |
Link Out ? help Back to Top | |
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Phytozome | Spipo20G0023900 |