PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo20G0007000
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family B3
Protein Properties Length: 294aa    MW: 33081.5 Da    PI: 8.3689
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo20G0007000genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3598.7e-191781698
                     EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
               B3 16 lvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98
                     + +p  f ++++ +   ++ + l+ +s ++W+v l +r  +g++++++GW+eFv++++L++gDf+vF++dg ++f  +v vf+
  Spipo20G0007000  1 MAIPAGFYKHIDPD--VHRRICLRGPSRNEWSVDL-VRDERGSVFFQRGWEEFVSDHDLNTGDFLVFQYDGGRRF--TVLVFE 78
                     57999999777544..3446***************.6888889**************************997777..888876 PP
2B346.75.7e-15201286595
                      -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
               B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                      +  s+v     + lp + + +h   +++s+t++l+ +s + Wev +i   ++g+  +++GW +F+ a++L++ D++vF+l+g  e + +v 
  Spipo20G0007000 201 MRDSNVYHGYYMGLPSSLV-KHL--PRGSRTMRLRGPSEEAWEVAYIRYESRGG--FSAGWGKFACAHNLESDDVLVFELSGPLEVRVHVY 286
                      5567777777889999999.553..46789****************65555555..89*********************998644445555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086315.933180IPR003340B3 DNA binding domain
CDDcd100174.63E-19177No hitNo description
PfamPF023626.9E-16177IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.3E-20182IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.71E-21185IPR015300DNA-binding pseudobarrel domain
SMARTSM010194.9E-10180IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.4E-18188286IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.32E-19190287IPR015300DNA-binding pseudobarrel domain
SMARTSM010192.1E-10196291IPR003340B3 DNA binding domain
PROSITE profilePS5086311.335197289IPR003340B3 DNA binding domain
CDDcd100179.61E-17200286No hitNo description
PfamPF023622.8E-12200286IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MAIPAGFYKH IDPDVHRRIC LRGPSRNEWS VDLVRDERGS VFFQRGWEEF VSDHDLNTGD  60
FLVFQYDGGR RFTVLVFEPT ACEKEESFHA IPRSEVVILG ESHKKRRLSE KEAVIVGAEA  120
VEMAPLVKPA PAEFAGSCKR YFSNLPCADD GGSGTRGLVR IKSRLGSVIS CRRSITKEEK  180
ARTLESAMSF QSKHPFGISV MRDSNVYHGY YMGLPSSLVK HLPRGSRTMR LRGPSEEAWE  240
VAYIRYESRG GFSAGWGKFA CAHNLESDDV LVFELSGPLE VRVHVYWWSS SPR*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44613766
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.18e-24B3 family protein