PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo1G0115200
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family M-type_MADS
Protein Properties Length: 335aa    MW: 36137 Da    PI: 9.5623
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo1G0115200genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF48.88.8e-161557547
                    SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS
          SRF-TF  5 nksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47
                     +  rqv+fskRr+g++KK  ELS LC++e av++ s+ +kl+
  Spipo1G0115200 15 RSAPRQVSFSKRRQGLFKKVCELSALCGTESAVLVKSPGDKLF 57
                    5677**********************************99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004325.1E-14162IPR002100Transcription factor, MADS-box
PROSITE profilePS5006618.432363IPR002100Transcription factor, MADS-box
PRINTSPR004044.2E-11525IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.19E-18676IPR002100Transcription factor, MADS-box
PfamPF003194.1E-161358IPR002100Transcription factor, MADS-box
PRINTSPR004044.2E-112540IPR002100Transcription factor, MADS-box
PRINTSPR004044.2E-114061IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MARAPRRVHV ARILRSAPRQ VSFSKRRQGL FKKVCELSAL CGTESAVLVK SPGDKLFSLG  60
EPDVDTVVDR FLDFVDRRAQ AQEVPQEVGE PGGAAVAAGG TRRRQRGRGP VRQHGQRRLV  120
VEELYRTLAM QDNWLEAADA RLEELRAGIR EMQAQLPHRW AAKVEDLEPA EAAEMVDALQ  180
VLLMRVSQVL AARQAQQGHL PGQASSSSYP PPPSSNTWQL LPDGSMAVGA APTMPAMGVF  240
QPPPFGPSPS TAHQLPWLDD DPMGGTSMAG SSQVFGRIAS STVFRDLNGM MAGSSSGYQP  300
LPHPPPPPPL FGNPFPSRRD GEGPSRGYGP PNFF*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.13e-19AGAMOUS-like 62