PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Spipo1G0113500 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
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Family | C3H | ||||||||
Protein Properties | Length: 237aa MW: 26762.4 Da PI: 7.9564 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 18.7 | 3.1e-06 | 99 | 119 | 6 | 26 |
-SGGGGTS--TTTTT-SS-SS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHg 26 C f+r G C+ G C+F+Hg Spipo1G0113500 99 CAEFRRAGACSKGQLCQFSHG 119 99******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 0.26 | 93 | 120 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 10.455 | 93 | 121 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 13 | 129 | 152 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 237 aa Download sequence Send to blast |
SCSRSLPLWH LMLLQRMRAF SVAQVELDVT SSCPPMVPQF PAPEGQSLEE SDEFRMYCFK 60 IKRCSKTRSH DWTQCPYAHR GEKARRRDPR KFPYHGVSCA EFRRAGACSK GQLCQFSHGV 120 FEFWLHPARY RTRPCKAGTQ CQRKVCFFAH TPEQLRPLSC DGCGCYADWR GQRGCCGRGL 180 GAVREEPSPS SSPSSFDKDC TDVTEDIRRL EIAGGDVGLG EEPDLPDIDW ICDLVK* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Embryo-specific transcription factor required at the globular to heart stage transition in embryo development. {ECO:0000269|PubMed:9501112}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010275497.1 | 4e-58 | PREDICTED: zinc finger CCCH domain-containing protein 54 | ||||
Swissprot | O65036 | 2e-53 | C3H54_ARATH; Zinc finger CCCH domain-containing protein 54 | ||||
TrEMBL | A0A0K9Q4D8 | 2e-69 | A0A0K9Q4D8_ZOSMR; Zinc finger CCCH domain-containing protein | ||||
STRING | XP_010275497.1 | 2e-57 | (Nelumbo nucifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1578 | 34 | 93 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G07500.1 | 1e-54 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | Spipo1G0113500 |