PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Spipo1G0096800 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
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Family | ERF | ||||||||
Protein Properties | Length: 186aa MW: 19733.1 Da PI: 4.8676 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 50.7 | 4.3e-16 | 24 | 72 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr +++g+Wv+eIr+p++ ++r++lg++ +ae+Aa a++ a+++l+g Spipo1G0096800 24 TYRGVR--SRSGKWVSEIREPRK---TTRIWLGTYPSAEMAAVAYDVAALALKG 72 69***6..668*********843...5***********************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 2.3E-29 | 24 | 86 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.6E-27 | 24 | 82 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.63E-18 | 24 | 82 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 2.0E-9 | 24 | 72 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 20.508 | 24 | 80 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 4.67E-28 | 25 | 82 | No hit | No description |
PRINTS | PR00367 | 5.3E-7 | 25 | 36 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.3E-7 | 62 | 82 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0050832 | Biological Process | defense response to fungus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 186 aa Download sequence Send to blast |
MGRLFVVGGG TQATATAAER HHPTYRGVRS RSGKWVSEIR EPRKTTRIWL GTYPSAEMAA 60 VAYDVAALAL KGGDAILNFP ESISSRPVPA STSPSDIRSA AAAAAAGLVH PKVETTEEPA 120 AEERARTPTG QASDPFVDEE EMFNLPHLLE SMAQGMLMSP PLLSPATHSD DSPDVSDCES 180 LWSYP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-14 | 25 | 85 | 6 | 68 | ATERF1 |
3gcc_A | 2e-14 | 25 | 85 | 6 | 68 | ATERF1 |
5wx9_A | 5e-14 | 22 | 84 | 12 | 76 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00558 | DAP | Transfer from AT5G52020 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008803287.1 | 2e-64 | ethylene-responsive transcription factor ERF027-like | ||||
Refseq | XP_010919217.1 | 1e-64 | ethylene-responsive transcription factor ERF027 | ||||
Swissprot | Q9CAN9 | 3e-44 | ERF26_ARATH; Ethylene-responsive transcription factor ERF026 | ||||
TrEMBL | A0A1D1YW15 | 4e-70 | A0A1D1YW15_9ARAE; Ethylene-responsive transcription factor ERF026 | ||||
STRING | XP_008803287.1 | 6e-64 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP159 | 35 | 354 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G52020.1 | 5e-35 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Spipo1G0096800 |