PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo1G0085000
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family B3
Protein Properties Length: 330aa    MW: 35838.4 Da    PI: 9.6479
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo1G0085000genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3985.8e-3136136196
                     EEEE-..-HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.sef 90 
                     f+kv tpsdv+k++rlv+pk++ae++   ++ + +++ l +ed++g+ W+++++y+++s++yv+tkGW++Fvk+++L++gD+v F +  g+  + 
  Spipo1G0085000  36 FDKVVTPSDVGKLNRLVIPKQHAEKYfplDSTNDKGMLLNFEDRTGKPWRFRYSYWNSSQSYVMTKGWSRFVKEKRLDAGDTVSFGRGvGEaARD 130
                     89**************************97777799*************************************************9543555555 PP

                     ..EEEE CS
              B3  91 elvvkv 96 
                     +l++ +
  Spipo1G0085000 131 RLFIDW 136
                     555555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.3E-4030139IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.12E-2933123IPR015300DNA-binding pseudobarrel domain
CDDcd100171.76E-2534120No hitNo description
PfamPF023626.6E-2836139IPR003340B3 DNA binding domain
SMARTSM010191.1E-2036140IPR003340B3 DNA binding domain
PROSITE profilePS5086313.8636138IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MEFPDANRSS VGSGNNGGAD KQQPLQAPFV EKEHMFDKVV TPSDVGKLNR LVIPKQHAEK  60
YFPLDSTNDK GMLLNFEDRT GKPWRFRYSY WNSSQSYVMT KGWSRFVKEK RLDAGDTVSF  120
GRGVGEAARD RLFIDWKRRI DAAHDPPRLL RLPIAGYHHH DPPSMMSFSR SLVPWSNLAV  180
PPPTSAITAL KVYDYGRQAG YGYNAAAAAA TTNPFLYLRS AGSTSQAGVQ LGVGSGYGGG  240
GDGGLTGLGI PMVFDSGPMG RGNATPKRVR LFGVNLDSSP SKDDTEGDAV AVEKPQLPLL  300
PPAQFRLGSS ETVESPRKGK EPMSLELEM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A5e-61311393113B3 domain-containing transcription factor NGA1
5os9_B5e-61311393113B3 domain-containing transcription factor NGA1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017697228.12e-95B3 domain-containing protein Os02g0683500-like
SwissprotQ8LMR92e-79Y3209_ORYSJ; B3 domain-containing protein Os03g0120900
TrEMBLA0A1D1ZE211e-98A0A1D1ZE21_9ARAE; B3 domain-containing protein Os03g0120900
STRINGXP_008783755.12e-95(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58337168
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46870.11e-61B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]