PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo1G0082100
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family C2H2
Protein Properties Length: 404aa    MW: 43348.8 Da    PI: 5.9917
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo1G0082100genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.10.0003235257123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     y+C+ Cgk F++   L  H  +H
  Spipo1G0082100 235 YQCGTCGKIFRSYQALGGHRASH 257
                     9***********99999998887 PP
2zf-C2H211.20.0011308330123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++Cp C ++Fs+   L  H r+H
  Spipo1G0082100 308 HECPVCFRVFSSGQALGGHKRSH 330
                     79******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.473431IPR007087Zinc finger, C2H2
SMARTSM003550.27426IPR015880Zinc finger, C2H2-like
PfamPF139121.7E-5426IPR007087Zinc finger, C2H2
SuperFamilySSF576671.17E-7426No hitNo description
PROSITE patternPS000280626IPR007087Zinc finger, C2H2
SuperFamilySSF576671.17E-7230257No hitNo description
SMARTSM003550.084235257IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.926235262IPR007087Zinc finger, C2H2
PfamPF139122.3E-9235259IPR007087Zinc finger, C2H2
PROSITE patternPS000280237257IPR007087Zinc finger, C2H2
SMARTSM003550.19308330IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.224308330IPR007087Zinc finger, C2H2
PfamPF139122.4E-11308331IPR007087Zinc finger, C2H2
PROSITE patternPS000280310330IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 404 aa     Download sequence    Send to blast
MDRHACKLCF RRFSNGRALG GHMRSHAPSA AVAAVAAVRS QLIEYSASPS ASSSASRGEL  60
EVTERVAEVA GEVVAGTEED AKQLLSYGLR ENPKKSFRLV DPEFSSTFAA ADYASGGCSS  120
VVVQDWESET ESSVPPSLRR RSKRRRRAPP LSPPKSEPSL DPEPVSSVSD TTPDEDVARC  180
LMMLSRDVWT TDTPAAAKMN SSDGEEEDEE DQPSDDSEEK RVAAARLRRG GRGKYQCGTC  240
GKIFRSYQAL GGHRASHKKI RPCLGSTLVD AEEEEDDDRR RRGHQIHDTD SEVNAAPCTV  300
PSGDRRIHEC PVCFRVFSSG QALGGHKRSH LINSSSTTNP STPPQVSSSV LAAAAAVHVS  360
ATADASPVRA TKSVGESLID LNQPPPMDEE AELSAVSDGQ QYK*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35183377
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.12e-31C2H2-like zinc finger protein