PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo1G0080100
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family GRAS
Protein Properties Length: 562aa    MW: 60591.8 Da    PI: 5.9703
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo1G0080100genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS252.61.5e-771705141346
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykal.ppsetsekn.........sseelaalklfs 85 
                     lv++L+e+Ae ++sg+l +a+++Larl+++ sp g+p+ R a+y +eAL+  +a+++s++  +  pp + s+ +         ++ +l+a+k+fs
  Spipo1G0080100 170 LVDQLFEAAELIESGNLVNAREILARLNHQLSPVGKPLLRSAFYCKEALRFIIAKHSSSIPPSSsPPMQRSP-SftapsspldVVLKLSAYKAFS 263
                     6899***************************************************77766544423333322.246788888899999******* PP

            GRAS  86 evsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp....egppslRiTgvgspesgskeeleetgerLakfAeelgvpf 176
                     e+sP+l+f+++t+ qa+le+++g++r+HiiDfdi+ G+QW +++q+La+R+    + +pslR+T++++ +s +  e+  t+e+L++fA+el++pf
  Spipo1G0080100 264 EISPLLQFANFTCTQALLEELSGCDRIHIIDFDIGVGGQWSSFMQELAQRRcaatAATPSLRLTAFAPLASYHPFEVGLTRENLSHFASELNIPF 358
                     **************************************************98888889**********9999*********************** PP

            GRAS 177 efnvlvakrledleleeL.rvkp.gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfd 269
                     efn+l   +++++++ +L ++++ gEa+aVnl     +l+   +s++     +L+lvk+lsPk+vv+v++  dh++ +F ++fl+ l+  ++l+d
  Spipo1G0080100 359 EFNIL---SVDSFDPASLlSMSHgGEAIAVNLPAC--SLY---HSVP----GLLRLVKQLSPKIVVCVDHGWDHSDFTFSRHFLHVLQSATMLLD 441
                     ****9...6666666665255558********984..333...3344....5******************************************* PP

            GRAS 270 sleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.s 346
                     s++a    + e  +k+Er ll+++i+n +  +  +    ++ +  W + + +aG+ p+++s+++++qa++l+++++  
  Spipo1G0080100 442 SIDAAC-GNPEVVNKIERYLLQPRIQNSLLGRLGA---AEKAVPLW-NLFASAGLVPLSFSNFTETQAECLMKRIQyR 514
                     ***995.5668999*************99877666...45666778.69************************99844 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098537.918144521IPR005202Transcription factor GRAS
PfamPF035145.3E-75170514IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0048768Biological Processroot hair cell tip growth
GO:0051301Biological Processcell division
Sequence ? help Back to Top
Protein Sequence    Length: 562 aa     Download sequence    Send to blast
MEDWDSVLSE PAVAAASSPG HDQSFLRWIM GDVDETFAVG LKQQHHHQLL PQAPLEFDGG  60
DGGGGFGLVD TVFGFEAAGG MGGGSSGSLV AAPLACSNPT TSNVGHPFLD NNGSANDGSR  120
ILPLQPNQGP LPGIKEPTVG EKSHLFGPNL LLNQQQAHPS QNPAFQPQAL VDQLFEAAEL  180
IESGNLVNAR EILARLNHQL SPVGKPLLRS AFYCKEALRF IIAKHSSSIP PSSSPPMQRS  240
PSFTAPSSPL DVVLKLSAYK AFSEISPLLQ FANFTCTQAL LEELSGCDRI HIIDFDIGVG  300
GQWSSFMQEL AQRRCAATAA TPSLRLTAFA PLASYHPFEV GLTRENLSHF ASELNIPFEF  360
NILSVDSFDP ASLLSMSHGG EAIAVNLPAC SLYHSVPGLL RLVKQLSPKI VVCVDHGWDH  420
SDFTFSRHFL HVLQSATMLL DSIDAACGNP EVVNKIERYL LQPRIQNSLL GRLGAAEKAV  480
PLWNLFASAG LVPLSFSNFT ETQAECLMKR IQYRDEVFAK TKPVGDEHSA DRLVLLFRDV  540
LTGPANHSGC WSFCRVKSLV S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A8e-2317646924303Protein SCARECROW
5b3h_D8e-2317646924303Protein SCARECROW
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020676049.11e-157scarecrow-like protein 27
TrEMBLA0A1D1YAD50.0A0A1D1YAD5_9ARAE; Scarecrow-like protein 6 (Fragment)
STRINGGSMUA_Achr8P11160_0011e-146(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20203796
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.12e-91GRAS family protein