PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo1G0078300
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family MYB_related
Protein Properties Length: 709aa    MW: 75466 Da    PI: 7.3261
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo1G0078300genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.41.1e-152468147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     r +WT+eE+ ++++a k++G   W +I +++g ++t+ q++s+ qk+
   Spipo1G0078300 24 REKWTEEEHSRFLEALKLYGRA-WQRIEEHIG-TKTAVQIRSHAQKF 68
                     789*****************88.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.27E-151872IPR009057Homeodomain-like
PROSITE profilePS5129419.2151973IPR017930Myb domain
TIGRFAMsTIGR015572.2E-162271IPR006447Myb domain, plants
SMARTSM007171.4E-122371IPR001005SANT/Myb domain
PfamPF002494.0E-132467IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.0E-82464IPR009057Homeodomain-like
CDDcd001672.43E-92669No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 709 aa     Download sequence    Send to blast
MDMYSSGEDL ILKTRKPYTI TKQREKWTEE EHSRFLEALK LYGRAWQRIE EHIGTKTAVQ  60
IRSHAQKFFS KINILRLELL ADALLEMREG KQDRRSASSP VCSEKDLLDM AGSHEKRTGD  120
QTLGRSNAGS DDSKCSVVLS LFQDAPCASV SCAGKHPADA GVKEAKTKAG YSEQHPPPVV  180
GGRGVRDGTD LDIGRFEGLS IDTQIRLAQE RSMRPRQPPN LCASPRNGPQ GRKSHPDHAP  240
PYSVRGEKST PGSYPTTLTS LSSLAGAHAN AAGSPAPAIS GTTEHNASAS MSSVHHPFAA  300
FPPFAQFGRD SGSSYLNMSS AFSSLIVSTL MQNPAVHAAA TVAASFWPTA DAEASTGSAS  360
ESFVGGIPMR QMNPSPSMAA IAAATVAAAS AWWATHGLLP FCPPPAAFHG GFAFAPAPTS  420
AIPRTKTAYA AKDDTQRKEE ATHSQPWTCP RPVDLRAPSP GQQPSPLSSS DSDESGEAGS  480
SRTTALKAPT VVVNHLNPSP DSREVRESDI GRGQKKADRS SCGSNTPSSS DVETDVVLNL  540
DKAMEEPKET HLGHLPSGGD ASNRRLRGGG SVGESWKEVS QEGRLAFQAL FSREVLPQSF  600
SPPHPKDGVP DKPEGDAAEL TMDLNSKVCA AAGDELAHEL GRSCPVPRGG SAPEEGPLTD  660
EIGQGRLKSR RTGFKPYKRC SMEAKDGRAT PVEEKDNKRI RLEGEAST*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00654PBMTransfer from LOC_Os08g06110Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A1D1YXV30.0A0A1D1YXV3_9ARAE; Protein LHY
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60313447
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01060.42e-36MYB_related family protein