PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo1G0068700
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family bHLH
Protein Properties Length: 636aa    MW: 69712 Da    PI: 9.3213
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo1G0068700genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH17.76.3e-06355382735
                     HHHHHHHHHHHHHHHHHHCTSCC.C...TT CS
             HLH   7 erErrRRdriNsafeeLrellPk.askaps 35 
                      +Er+RR+++++++  Lr l+Pk +   ++
  Spipo1G0068700 355 VAERKRREKLKDRLYVLRALVPKiS--KRK 382
                     58*********************66..222 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142155.3E-1154208IPR025610Transcription factor MYC/MYB N-terminal
SuperFamilySSF474595.82E-6349384IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.0E-6355388IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.13E-4355382No hitNo description
PROSITE profilePS516718.879432511IPR002912ACT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0009555Biological Processpollen development
GO:0048658Biological Processanther wall tapetum development
GO:0005634Cellular Componentnucleus
GO:0000978Molecular FunctionRNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 636 aa     Download sequence    Send to blast
MTTTAAAAAG RHLQVTLNLP SRKRRSYVVI SETDARDRGA AAAVMKDQEG SSTERLRALV  60
GRGRWDLCVV WEVSLDKRFL ELKACCCGGA DQSGGGDDAS QVGFTFAAWE KCRDSKFPLH  120
RRTRACAALA ELPPSIPLDS TAFHAQAFLS GIPAWTHPSQ HLSGTNDSIE AERATRVLVP  180
GGGGLVELFV TSHVPEDQAT VDFVAAQFAR SHEVAAVAGE DLHDPHAWIP LPSSPCDQAS  240
SRWDVHGHQS HLGSSPLALF EGYRDDDVLL EGFSASIQSA NLAPASFDTA AGINRSTLPE  300
STVPGELGFN DKEPVKRDGQ WQAGFGGEAI RDQMDDEEEQ KIGRSARQHS CKNLVAERKR  360
REKLKDRLYV LRALVPKISK RKTDATKAGP AASAAAITVM GMACYPGKWL SFTIQGTEPQ  420
VEVSQVGSNR FFLKVFCEHR RGGFVRLMEA MASLGLDVVN VNVTTSEPLV LNVFEVQKRD  480
SEVVREDQVR SSLLRLTMNS DKARWPADPP PVAGRSVGLE SHVDRHPQAK RPTYSPTARH  540
TRARITNGAA PIHVFLTFFP SNRLRRLHEE HIILAFNLPT RSSRTYDGHR HVGISPRGAR  600
ASLILPSPRA LRAPGLWCKF ILRGSEWRRL RIAVI*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12025SRKRRS
2356361ERKRRE
3357362RKRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP55303449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16910.11e-22bHLH family protein