PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo1G0030700
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family BES1
Protein Properties Length: 715aa    MW: 80132.8 Da    PI: 5.3067
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo1G0030700genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF822125.56.5e-39962312131
          DUF822   2 gsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpl....eeaeaagssasaspes 92 
                     g +r ++ +E+E++k+RER+RRai+a+i++GLR++Gny+l++raD+neV+ AL+reAGw+v +DGtt+++              ag+ as+sp  
  Spipo1G0030700  96 GMRRCRPKEEKERTKLRERHRRAITARILSGLRRHGNYNLRVRADINEVIGALAREAGWTVLPDGTTFPARATNSqvgrPPGTPAGALASISPAQ 190
                     6789999*************************************************************954444424444556666666666654 PP

          DUF822  93 slq..sslkssalaspvesysaspksssfpspssldsisla 131
                     +      +      s ++  s+++k + +p ps+++  s a
  Spipo1G0030700 191 NPVplRGVYPAGALSSTDFRSCRMKGVYVPNPSEMSGRSRA 231
                     44334455666677778888888888888888877766555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056877.1E-3597237IPR008540BES1/BZR1 plant transcription factor, N-terminal
SuperFamilySSF514456.51E-190271709IPR017853Glycoside hydrolase superfamily
Gene3DG3DSA:3.20.20.805.3E-208274707IPR013781Glycoside hydrolase, catalytic domain
PfamPF013732.1E-115280700IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.8E-75311325IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.8E-75332350IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.8E-75354375IPR001554Glycoside hydrolase, family 14
PROSITE patternPS005060358366IPR018238Glycoside hydrolase, family 14, conserved site
PRINTSPR008421.1E-8437446IPR001371Glycoside hydrolase, family 14B, plant
PRINTSPR007501.8E-75447469IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.8E-75520539IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.8E-75554570IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.8E-75571582IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.8E-75589612IPR001554Glycoside hydrolase, family 14
PRINTSPR008421.1E-8592602IPR001371Glycoside hydrolase, family 14B, plant
PRINTSPR007501.8E-75629651IPR001554Glycoside hydrolase, family 14
PRINTSPR008421.1E-8680694IPR001371Glycoside hydrolase, family 14B, plant
PRINTSPR008421.1E-8695709IPR001371Glycoside hydrolase, family 14B, plant
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000272Biological Processpolysaccharide catabolic process
GO:0048831Biological Processregulation of shoot system development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0016161Molecular Functionbeta-amylase activity
Sequence ? help Back to Top
Protein Sequence    Length: 715 aa     Download sequence    Send to blast
MEKLAETSDE DEEDLDMDVK EEDEDDGDDD DDDENNKSAY SRAVVIGGAG AGKEFGNNHG  60
NRFQQQQHPQ IGSADGDQQQ ERMTMIIGTG GGSGGGMRRC RPKEEKERTK LRERHRRAIT  120
ARILSGLRRH GNYNLRVRAD INEVIGALAR EAGWTVLPDG TTFPARATNS QVGRPPGTPA  180
GALASISPAQ NPVPLRGVYP AGALSSTDFR SCRMKGVYVP NPSEMSGRSR ASSEVRAERA  240
AEDSPLAGSC MDGVDDKQRL DAPSIMQERD FSGTPYVPVY VMLPLGVINM KCELVDPDVL  300
RKQLIILKSA NVDGVMVDCW WGIVEAHAPQ EYNWQGYKRL FQIVRDLKLK LQVVMSFHEC  360
GGNVGDDVCI PLPHWVSEIG RSNPDIFFTD REGRRNPECL TWGIDKERVL RGRTAVEVYF  420
DFMRSFRVEF DEFFEDRVIS EIEVGLGPCG ELRYPSYPVK HGWRYPGIGE FQCYDKYMMK  480
SLRKAAEVRG HVFWAKGPDN AGSYNSQPHE TGFFRDGGDY DSYYGRFFLG WYSEVLTDHA  540
DRVLSLANLA FEGTCIAAKV SGIHWWYKTA SHAAELTAGF YNPCNRDGYA AIAATLKKHE  600
AALNFTCVEL RTLDQHEDFP EALADPEGLV WQVLNAAWDA KIPVASENAL PCYDREGYNK  660
ILENAKPFDD PDGRHLSAFT YLRLSPALME GHNFIEFERF VKKMHGHFHY VINS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1bya_A1e-16227671311450BETA-AMYLASE
1byb_A1e-16227671311450BETA-AMYLASE
1byc_A1e-16227671311450BETA-AMYLASE
1byd_A1e-16227671311450BETA-AMYLASE
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010255372.10.0PREDICTED: beta-amylase 7-like isoform X2
SwissprotO808310.0BAM7_ARATH; Beta-amylase 7
TrEMBLA0A1D1XH050.0A0A1D1XH05_9ARAE; Beta-amylase
STRINGXP_010255371.10.0(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21413663
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45880.10.0beta-amylase 7
Publications ? help Back to Top
  1. Soyk S, et al.
    The Enzyme-Like Domain of Arabidopsis Nuclear β-Amylases Is Critical for DNA Sequence Recognition and Transcriptional Activation.
    Plant Cell, 2014. 26(4): p. 1746-1763
    [PMID:24748042]