PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo1G0023200
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family ERF
Protein Properties Length: 153aa    MW: 16794.5 Da    PI: 5.0826
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo1G0023200genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.61e-203485155
             AP2  1 sgykGVrwdkkrgrWvAeIrdpse.ngkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    ++y+GVr+++ +g+++AeIrd  + ng   r++lg+f taeeAa+a+++a+ +++g
  Spipo1G0023200 34 TKYRGVRRRP-WGKFAAEIRDS-NrNG--VRVWLGTFNTAEEAARAYDRAAYAMRG 85
                    69********.**********4.4254..*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.41E-203494No hitNo description
PfamPF008472.1E-153485IPR001471AP2/ERF domain
SuperFamilySSF541714.97E-243594IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.106.6E-323594IPR001471AP2/ERF domain
SMARTSM003801.4E-383599IPR001471AP2/ERF domain
PROSITE profilePS5103223.8153593IPR001471AP2/ERF domain
PRINTSPR003671.3E-113647IPR001471AP2/ERF domain
PRINTSPR003671.3E-115975IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 153 aa     Download sequence    Send to blast
MPAPEPSLPP VKPPSPLEME DDSLRAGERE EGDTKYRGVR RRPWGKFAAE IRDSNRNGVR  60
VWLGTFNTAE EAARAYDRAA YAMRGSLAVL NFPNESLPRN TRPSSSQSSA LAQGRSISAG  120
TSSGERIELE YLDDKLLEDL LASGEDRTTR NN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A7e-3135951474Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009396176.11e-42PREDICTED: ethylene-responsive transcription factor ERF098-like
RefseqXP_009396177.11e-42PREDICTED: ethylene-responsive transcription factor ERF098-like
RefseqXP_018680085.11e-42PREDICTED: ethylene-responsive transcription factor ERF098-like
SwissprotQ9LTC54e-38ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLA0A2G9I9T02e-43A0A2G9I9T0_9LAMI; Uncharacterized protein
STRINGGSMUA_Achr4P12070_0014e-42(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP10337465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23230.12e-24ERF family protein
Publications ? help Back to Top
  1. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]