PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo1G0014700
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family ERF
Protein Properties Length: 171aa    MW: 18282.9 Da    PI: 4.2581
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo1G0014700genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.54.3e-203988255
             AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                     y+GVr++  +g+WvAeIr+p   + r +r +lg++gta eAa+a++ a+++l+g
  Spipo1G0014700 39 TYRGVRQRT-WGKWVAEIREP---N-RgARLWLGTYGTAVEAARAYDDAARSLYG 88
                    69****999.**********8...3.35***********************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.91E-173898No hitNo description
PfamPF008476.2E-143988IPR001471AP2/ERF domain
PROSITE profilePS5103221.3113996IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.3E-303997IPR001471AP2/ERF domain
SMARTSM003801.5E-3439102IPR001471AP2/ERF domain
SuperFamilySSF541716.08E-213997IPR016177DNA-binding domain
PRINTSPR003673.8E-104051IPR001471AP2/ERF domain
PRINTSPR003673.8E-106278IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 171 aa     Download sequence    Send to blast
LWEGGDGGGG GEDEEAGGLR RSRKGCMKGK GGPENAQCTY RGVRQRTWGK WVAEIREPNR  60
GARLWLGTYG TAVEAARAYD DAARSLYGDC ARLNLPEQQS QSAEPSAAQP AEAAPPGDPR  120
VDFADAGLWE ELIDDDGLGW VGRMCNEGGL PQEGGAHFID FDDLQLSWEA *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-1540981574Ethylene-responsive transcription factor ERF096
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009386363.17e-45PREDICTED: dehydration-responsive element-binding protein 2C-like
TrEMBLA0A0K9P5398e-45A0A0K9P539_ZOSMR; Uncharacterized protein
STRINGGSMUA_AchrUn_randomP08690_0013e-44(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP55103454
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18450.12e-33ERF family protein