PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo1G0014100
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family bHLH
Protein Properties Length: 312aa    MW: 33736.1 Da    PI: 4.402
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo1G0014100genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH48.71.3e-15244290455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      hn  ErrRRdriN+++  L+el+P +      K +Ka++L  A++Y+ksLq
  Spipo1G0014100 244 VHNLSERRRRDRINEKMKALQELIPRC-----NKSDKASMLDDAIRYLKSLQ 290
                     6*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.01E-19237298IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.841240289IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.67E-16243294No hitNo description
PfamPF000103.9E-13244290IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.8E-20244298IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.1E-16246295IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MNCCVPEFFL EDDTVFPSSC VRNLADLSGE DFVELLWDNG PVYRRTSQEE LRNRSGISAS  60
SVSAGAAAAE PFLEEDEMAS WLDYQLGDGE ERGTVGYADR VDLPEKPQTT AAVVPWTDGD  120
GWGASGKPPE VQEKLLRSLG SGESAIVDSS ATSDPTMGGP PEPRASSGRE KGETGETAIC  180
EQGLTSSSAV ICEAEAADQA APRPEARKRK AAEADDSDSL SESIDKQDDT RRSAPKRRPR  240
AAEVHNLSER RRRDRINEKM KALQELIPRC NKSDKASMLD DAIRYLKSLQ MQIQNSEQGA  300
GGRDVGVAEK P*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1235252KRRPRAAEVHNLSERRRR
2248253ERRRRD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A1D1YUF61e-70A0A1D1YUF6_9ARAE; Transcription factor PIF1
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP95623043
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20180.15e-26phytochrome interacting factor 3-like 5