PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Spipo1G0005000 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
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Family | NAC | ||||||||
Protein Properties | Length: 266aa MW: 30111.7 Da PI: 5.8051 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 160.1 | 8.9e-50 | 10 | 138 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 lppGfrFhP+deelv++yL+kkv++++++ ++ +v+++ +ePw+Lp +++ +++ewyfFs rd+ky++g r+nratk+gyWkatgkd++v++ Spipo1G0005000 10 LPPGFRFHPSDEELVCYYLCKKVANERVSG-VTLVDVNLHVLEPWELPDAARLSTNEWYFFSFRDRKYSSGFRANRATKTGYWKATGKDRPVYEP 103 79*************************888.569**************87788999**************************************8 PP NAM 96 .kgelvglkktLvfykgrapkgektdWvmheyrle 129 g l g++ktLvfy grap+g+kt Wvmhe+rle Spipo1G0005000 104 sAGGLAGMRKTLVFYGGRAPNGVKTGWVMHEFRLE 138 78889***************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.44E-58 | 7 | 156 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 57.37 | 10 | 156 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.3E-27 | 11 | 137 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 266 aa Download sequence Send to blast |
MALREIESTL PPGFRFHPSD EELVCYYLCK KVANERVSGV TLVDVNLHVL EPWELPDAAR 60 LSTNEWYFFS FRDRKYSSGF RANRATKTGY WKATGKDRPV YEPSAGGLAG MRKTLVFYGG 120 RAPNGVKTGW VMHEFRLEST GEAPKEDWVL CRVFNKERED TMREGLENRL DRNEFAFLHP 180 STSHGTTEEY PHQLALYSTH YRHRQDAAAG HSGFFSSSGL HSGFLDISPE MEAETVTPLR 240 LESGGGGELE FLLDAKDLDI MSWET* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 6e-53 | 5 | 159 | 10 | 171 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator. Involved in molecular mechanisms regulating shoot apical meristem (SAM) formation during embryogenesis and organ separation. Required for axillary meristem initiation and separation of the meristem from the main stem. May act as an inhibitor of cell division. {ECO:0000269|PubMed:12837947, ECO:0000269|PubMed:17122068}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By BRM, at the chromatin level, and conferring a very specific spatial expression pattern. {ECO:0000269|PubMed:16854978}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019702044.1 | 8e-96 | NAC domain-containing protein 100 | ||||
Swissprot | Q9S851 | 6e-61 | NAC31_ARATH; Protein CUP-SHAPED COTYLEDON 3 | ||||
TrEMBL | A0A1D1YXD5 | 2e-94 | A0A1D1YXD5_9ARAE; NAC domain-containing protein 21/22 (Fragment) | ||||
STRING | GSMUA_Achr1P10860_001 | 2e-92 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP697 | 38 | 166 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G28530.1 | 2e-77 | NAC domain containing protein 74 |
Link Out ? help Back to Top | |
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Phytozome | Spipo1G0005000 |
Publications ? help Back to Top | |||
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