PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Spipo19G0026400 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
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Family | ERF | ||||||||
Protein Properties | Length: 116aa MW: 13077 Da PI: 9.0806 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 28.7 | 3.4e-09 | 79 | 114 | 9 | 50 |
AP2 9 dkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaar 50 ++ +grW A+I++ ++r++lg+f +Aa+a++ a+ Spipo19G0026400 79 RP-NGRWGAQIYEK-----HQRVWLGTFNDDAKAARAYEVAA 114 45.8*********3.....5**********9*******9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 7.64E-14 | 71 | 114 | No hit | No description |
SuperFamily | SSF54171 | 9.81E-10 | 72 | 114 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 14.5 | 72 | 115 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.3E-4 | 72 | 115 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 7.5E-13 | 72 | 114 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 5.5E-5 | 79 | 115 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 116 aa Download sequence Send to blast |
MDAYVWMLPP GPILNSMKSS AGCEVWGGMN LAILWSTLIH PHKKFQRTRR NTTVALDLEI 60 GLEEPRKPPS SQYEEVVPRP NGRWGAQIYE KHQRVWLGTF NDDAKAARAY EVAAQ* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds specifically to bipartite recognition sequences composed of two unrelated motifs, 5'-CAACA-3' and 5'-CACCTG-3'. May function as negative regulator of plant growth and development. {ECO:0000269|PubMed:15040885, ECO:0000269|PubMed:9862967}. | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Down-regulated by brassinosteroid and zeatin. {ECO:0000269|PubMed:15040885}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009386126.1 | 6e-26 | PREDICTED: AP2/ERF and B3 domain-containing transcription repressor RAV2-like | ||||
Swissprot | Q9LS06 | 7e-24 | RAVL4_ARATH; AP2/ERF and B3 domain-containing transcription factor ARF14 | ||||
Swissprot | Q9ZWM9 | 7e-24 | RAV1_ARATH; AP2/ERF and B3 domain-containing transcription factor RAV1 | ||||
TrEMBL | A0A200Q3K7 | 1e-25 | A0A200Q3K7_9MAGN; AP2/ERF domain | ||||
STRING | Aquca_026_00225.1 | 1e-24 | (Aquilegia coerulea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP18707 | 5 | 6 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G13260.1 | 3e-26 | related to ABI3/VP1 1 |
Link Out ? help Back to Top | |
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Phytozome | Spipo19G0026400 |
Publications ? help Back to Top | |||
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