PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Spipo19G0026300 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
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Family | B3 | ||||||||
Protein Properties | Length: 219aa MW: 24380 Da PI: 10.7532 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 84.9 | 7e-27 | 46 | 148 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS..-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh...ggkkeesktltledesg..rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 f+k tps v+k+ rlv+pk++ae++ +++ + sk + l++ ++ ++W+++++y+++s++yvltkGW++Fvk+++L++ D+v F+ e Spipo19G0026300 46 FDKGVTPSEVGKLTRLVIPKQHAEKYfppQIDGAASKVILLNSVDSgrKTWRFRYSYWNSSQSYVLTKGWSRFVKEKRLNADDVVSFQQPTGPE 139 88999***********************94444556566666544346****************************************544477 PP E..EEEEE- CS B3 90 felvvkvfr 98 ++l++++ r Spipo19G0026300 140 RQLYISWKR 148 778887766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 5.6E-34 | 41 | 156 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.35E-24 | 44 | 132 | No hit | No description |
SuperFamily | SSF101936 | 5.62E-25 | 44 | 148 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 1.6E-19 | 46 | 150 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.3E-23 | 46 | 149 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.717 | 46 | 150 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 219 aa Download sequence Send to blast |
MLRKHTYRDE LQQGKRALGP TYGASPVAVH RHAISGVGSA AREHLFDKGV TPSEVGKLTR 60 LVIPKQHAEK YFPPQIDGAA SKVILLNSVD SGRKTWRFRY SYWNSSQSYV LTKGWSRFVK 120 EKRLNADDVV SFQQPTGPER QLYISWKRRV SAAASTSIPG FPPFQPARPI QMVRLFSVNI 180 IKEAGGTVAE IICSMRSQGP TQVPWERGAL IAYIAIVE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wid_A | 3e-45 | 43 | 159 | 11 | 127 | DNA-binding protein RAV1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018859781.1 | 8e-67 | PREDICTED: AP2/ERF and B3 domain-containing transcription repressor RAV2-like | ||||
Swissprot | Q8RZX9 | 6e-53 | Y1934_ORYSJ; AP2/ERF and B3 domain-containing protein Os01g0693400 | ||||
TrEMBL | A0A2G9I1N7 | 9e-66 | A0A2G9I1N7_9LAMI; Uncharacterized protein | ||||
TrEMBL | A0A2I4HUE5 | 2e-65 | A0A2I4HUE5_JUGRE; AP2/ERF and B3 domain-containing transcription repressor RAV2-like | ||||
STRING | XP_010265251.1 | 2e-65 | (Nelumbo nucifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP456 | 38 | 203 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G25560.1 | 2e-54 | RAV family protein |
Link Out ? help Back to Top | |
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Phytozome | Spipo19G0026300 |