PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo19G0026200
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family C2H2
Protein Properties Length: 275aa    MW: 30370.9 Da    PI: 8.3386
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo19G0026200genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.74.9e-06110129120
                      EEETTTTEEESSHHHHHHHH CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                      ++Cp C+k+F+r  n++ H+
  Spipo19G0026200 110 FSCPVCSKTFNRYNNMQMHM 129
                      89*****************9 PP
2zf-C2H2120.00065197219123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      + C  C+k+F  + + ++H +++
  Spipo19G0026200 197 FACRRCSKTFAVRGDWRTHEKNC 219
                      78*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.51E-5101132No hitNo description
SMARTSM003550.054110132IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.242110137IPR007087Zinc finger, C2H2
PfamPF128749.3E-4110129No hitNo description
Gene3DG3DSA:3.30.160.601.8E-6110129IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280112132IPR007087Zinc finger, C2H2
SuperFamilySSF576671.34E-5181217No hitNo description
Gene3DG3DSA:3.30.160.601.1E-4183217IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035593197217IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010087Biological Processphloem or xylem histogenesis
GO:0010305Biological Processleaf vascular tissue pattern formation
GO:0010588Biological Processcotyledon vascular tissue pattern formation
GO:0048364Biological Processroot development
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
LLPPTYPSLS LSSAAEEDDG DDDHHFLLTL GPPGAPSCPQ GSASKSHQPP LQLERDNEHP  60
IDDAAITLRI GPPNKSGATG VSSCGGCSDD TQGQYWIPSP AQILVGPTQF SCPVCSKTFN  120
RYNNMQMHMW GHGSQYRKGP ESLRTTTRQV LPSMMRLPCY CCAPGCRNNI EHPRARPLKD  180
FRTLQTHYKR KHGSRPFACR RCSKTFAVRG DWRTHEKNCG RLWFCICGSD FKHKRSLKDH  240
VRSFGSDHAP HHITSSHSSG SGGGGDGRLY EDDGD
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator (Probable). Involved in leaf vasculature patterning (PubMed:18643975). {ECO:0000269|PubMed:18643975, ECO:0000305|PubMed:20541552}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010647907.11e-112PREDICTED: zinc finger protein WIP6
RefseqXP_012082035.11e-112zinc finger protein WIP6
SwissprotQ9FX681e-102ZWIP6_ARATH; Zinc finger protein WIP6
TrEMBLA0A067KC111e-111A0A067KC11_JATCU; Uncharacterized protein
TrEMBLA0A438FYS01e-111A0A438FYS0_VITVI; Zinc finger protein WIP6
TrEMBLD7T9881e-111D7T988_VITVI; Uncharacterized protein
STRINGVIT_01s0011g03100.t011e-112(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP113063241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13290.11e-103C2H2-like zinc finger protein