PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo19G0022500
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family ARR-B
Protein Properties Length: 461aa    MW: 51850.4 Da    PI: 6.4285
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo19G0022500genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like70.72.2e-22163216155
          G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                      k+++ W ++LH +Fv+av+++ G+++AtPk+il+lm+ + L ++h++SHLQkYR 
  Spipo19G0022500 163 KQKVSWDHDLHLKFVHAVDRI-GIKQATPKRILQLMGRQELKRSHIASHLQKYRK 216
                      799******************.********************************6 PP
2Response_reg41.95.2e-15151131104
                      EEEE.SSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHH CS
     Response_reg   1 vliv.dDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealk 91 
                      +++v  De+++ +l++++++  +y +v++++++++al+ lk+ d  +Dl+++ ++mp++dG+ ll++ ++e  ++p+i      e ++a+e+l 
  Spipo19G0022500  15 IIVVdNDEQSLHDLVQKLIT-FRY-KVTACSKASSALKVLKNTDerIDLVITEVRMPDIDGFSLLQHVKSEF-NIPVI-----REHDLAVECLV 100
                      68893455555555555555.999.99*************998888***********************998.78887.....57789****** PP

                      TTESEEEESS--H CS
     Response_reg  92 aGakdflsKpfdp 104
                      aGa  +  Kp++ 
  Spipo19G0022500 101 AGATFYHQKPVEL 113
                      ***9999999876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521721.57E-1911123IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23009.5E-2012132No hitNo description
SMARTSM004481.4E-813120IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011018.99914124IPR001789Signal transduction response regulator, receiver domain
PfamPF000728.8E-1215114IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.54E-1516113No hitNo description
SuperFamilySSF466893.23E-13161220IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.0E-22162220IPR009057Homeodomain-like
TIGRFAMsTIGR015574.8E-20163216IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 461 aa     Download sequence    Send to blast
MDNDITTLFP NGLRIIVVDN DEQSLHDLVQ KLITFRYKVT ACSKASSALK VLKNTDERID  60
LVITEVRMPD IDGFSLLQHV KSEFNIPVIR EHDLAVECLV AGATFYHQKP VELSTVGTIW  120
QYVALLGPVA PSMAVEQTTE DDHDDEEEED SVNNQDKEVG GKKQKVSWDH DLHLKFVHAV  180
DRIGIKQATP KRILQLMGRQ ELKRSHIASH LQKYRKYLKR KDPSNQHRSS SCFWLHTTER  240
PTVLNSGPKD ILKKHKLELG IPDREGITDA QVPQPQASLR LPQMMNLEQI NVDQQRRLLY  300
DSYIKRRLSG VSNVGSIDPP DTAFPALQTI LPNSLGNLTA SPALSTSEGH GSYSVLIARN  360
IHSMAENSRP QNLTQGSNYV GLQLHSHTGE LGLIHGMPIN VPFGNENVDL QQNQNQLHNN  420
ETRTLNEQYL ASQRNTKSNV LDTIEDTSWE TILSHLCDTE *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A4e-13162220462ARR10-B
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP130171928
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.15e-36response regulator 2