PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo19G0008500
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family Trihelix
Protein Properties Length: 318aa    MW: 35807.6 Da    PI: 10.2966
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo19G0008500genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix46.88e-1521111186
         trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm..rergf...erspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                      +W++  + +Li+a  e+  +++rg+l+ ++W+ev+ ++  r++ +   +rs +qCk++++ ++k+yk ++++  ++  ++ s +p++d+l+
  Spipo19G0008500  21 CWSEGATSTLIDAWGERFLEVNRGNLRRKHWQEVAVVVnsRRTDVprpTRSDIQCKNRIDTIKKKYKMERTRIMSGDGKAASLWPFYDRLD 111
                      7*************************************775555544578**************************999999******997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.8E-2319112No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MEGKKEKGLA PNPALPYRED CWSEGATSTL IDAWGERFLE VNRGNLRRKH WQEVAVVVNS  60
RRTDVPRPTR SDIQCKNRID TIKKKYKMER TRIMSGDGKA ASLWPFYDRL DFLIGASSPA  120
SQKGSPLSLS LPHWKKPSAH TATATAWPSS TMKEKRHNRV VPPEDSSFLK RKYSAVAAAA  180
AAAAAAHKAE EINSEKLKSS PERSSERGFH GRDNNSAADD IVGNVEGVRE LARAVLHFGK  240
VYERVETAKQ QQMLELEKQR MESTRSLETR MMQIFVDYQI QFERLKKPKR AAFGEFDASS  300
SSELLQQRIL PLLHTDA*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010920067.14e-82trihelix transcription factor ASIL2 isoform X2
TrEMBLA0A1D1XF921e-102A0A1D1XF92_9ARAE; Uncharacterized protein
STRINGXP_008789387.12e-80(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20653279
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58630.14e-51sequence-specific DNA binding transcription factors