PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Spipo18G0015200 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 248aa MW: 27908.6 Da PI: 10.0123 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 108.4 | 8.5e-34 | 59 | 199 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......lelee....vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk.... 79 lp+G++F+Ptd+el+ e+L+ k++ ++ + + +i+ +i++++P++Lp v+++ +fF++ +k+y+tg+rk+r+++ Spipo18G0015200 59 LPAGVKFDPTDQELL-EHLEGKTRPETtklhplV---DefipTIEGEtGICYTHPEKLP-GVRKDGLVRHFFHRPSKAYTTGNRKRRKVHagaq 147 799************.99*****99995554332...144333554448**********.566666788******************8663444 PP NAM 80 ..sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 + +W++tgk+++v++ +g+l g kk+Lv+y +g+++k+ekt+Wvmh+y+l Spipo18G0015200 148 ggETRWHKTGKTRPVVA-NGRLAGYKKILVLYagSGKQRKPEKTSWVMHQYHL 199 33556************.999***********666799999**********98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 5.62E-38 | 51 | 218 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 33.244 | 59 | 218 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.2E-15 | 60 | 199 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 248 aa Download sequence Send to blast |
MRWRSRHDDD GDDGHEAEKR PASSADQTLP RKTTTQACPS CGHRVQSPEQ ATLQDLPGLP 60 AGVKFDPTDQ ELLEHLEGKT RPETTKLHPL VDEFIPTIEG ETGICYTHPE KLPGVRKDGL 120 VRHFFHRPSK AYTTGNRKRR KVHAGAQGGE TRWHKTGKTR PVVANGRLAG YKKILVLYAG 180 SGKQRKPEKT SWVMHQYHLG PGEEERDGEL VVSKVFYQTQ PRQCGPIYFK ISIPERAKDL 240 HSNKVIR* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 6e-12 | 42 | 199 | 2 | 140 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:22133261}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010919316.1 | 1e-117 | NAC domain-containing protein 73 | ||||
Swissprot | O49459 | 1e-108 | NAC73_ARATH; NAC domain-containing protein 73 | ||||
TrEMBL | E0CTJ0 | 1e-115 | E0CTJ0_VITVI; Uncharacterized protein | ||||
STRING | VIT_12s0028g03050.t01 | 1e-116 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3075 | 37 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G28500.1 | 1e-111 | NAC domain containing protein 73 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Spipo18G0015200 |
Publications ? help Back to Top | |||
---|---|---|---|
|