PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo17G0043400
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family ERF
Protein Properties Length: 216aa    MW: 22963.6 Da    PI: 4.898
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo17G0043400genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.61.3e-1777129156
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 
                      ++y+GVr ++ +g+++AeIrd +    +  r++lg+f++ae Aa a+++a+ +++g+
  Spipo17G0043400  77 TCYRGVRKRP-WGKFAAEIRDSTR---HgMRVWLGTFDSAEAAALAYDQAAFAMRGA 129
                      68********.**********422...25*************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.4E-1377128IPR001471AP2/ERF domain
PROSITE profilePS5103222.61678136IPR001471AP2/ERF domain
SuperFamilySSF541714.32E-2278138IPR016177DNA-binding domain
SMARTSM003804.4E-3578142IPR001471AP2/ERF domain
PRINTSPR003674.0E-107990IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.5E-3079137IPR001471AP2/ERF domain
CDDcd000181.30E-1779137No hitNo description
PRINTSPR003674.0E-10102118IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006952Biological Processdefense response
GO:0009873Biological Processethylene-activated signaling pathway
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
MGSFFPSTSS DQSSESSWGS PEAVFGYPEE SLPFNENDPE EMMLFGMLAE VGAGGVTDCG  60
GSCREEEAES GGAAKNTCYR GVRKRPWGKF AAEIRDSTRH GMRVWLGTFD SAEAAALAYD  120
QAAFAMRGAM AVLNFPVERV AESLREIRHC GGGGGGEEGG SPAIALKKRH SLRSRSSRRK  180
GGAAKARRVA VVELEDLGAD YLEELLMASE GAVPW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A9e-2871138774Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the GCC-box cis-acting elements found in the promoter regions of ethylene-responsive genes (PubMed:23057995). Acts downstream of MYC2 in the jasmonate-mediated response to Botrytis cinerea infection (PubMed:28733419). With MYC2 forms a transcription module that regulates pathogen-responsive genes (PubMed:28733419). {ECO:0000269|PubMed:23057995, ECO:0000269|PubMed:28733419}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00374DAPTransfer from AT3G23240Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding and infection with the fungal pathogen Botrytis cinerea. {ECO:0000269|PubMed:28733419}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010093429.16e-70ethylene-responsive transcription factor 1B
SwissprotA0A3Q7I5Y94e-62ERFC3_SOLLC; Ethylene-response factor C3
TrEMBLA0A2R6PP943e-70A0A2R6PP94_ACTCH; Ethylene-responsive transcription factor 1B like
STRINGXP_010093429.12e-69(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27737249
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23240.12e-38ethylene response factor 1
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Pirrello J, et al.
    Functional analysis and binding affinity of tomato ethylene response factors provide insight on the molecular bases of plant differential responses to ethylene.
    BMC Plant Biol., 2012. 12: p. 190
    [PMID:23057995]
  3. Du M, et al.
    MYC2 Orchestrates a Hierarchical Transcriptional Cascade That Regulates Jasmonate-Mediated Plant Immunity in Tomato.
    Plant Cell, 2017. 29(8): p. 1883-1906
    [PMID:28733419]