PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo17G0036600
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family NF-YB
Protein Properties Length: 155aa    MW: 17380.7 Da    PI: 4.3698
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo17G0036600genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB75.48.4e-241193385
            NF-YB  3 eqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkv 85
                     ++d  lP a + +i+k++lP + ++++da++++ ec +efi +v+se+++ c re+++ti+++ ++ al +lGf +y+e++ +
  Spipo17G0036600 11 KEDVSLPKATMFKIIKEMLPPDVRVARDAQDLLVECCVEFINLVSSESNEVCSREDKRTIAPEHVIQALKDLGFGEYIEEVYA 93
                     68999**************************************************************************9865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.102.8E-388139IPR009072Histone-fold
SuperFamilySSF471131.59E-3512139IPR009072Histone-fold
PfamPF008089.0E-211579IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 155 aa     Download sequence    Send to blast
MEPMDIVGKS KEDVSLPKAT MFKIIKEMLP PDVRVARDAQ DLLVECCVEF INLVSSESNE  60
VCSREDKRTI APEHVIQALK DLGFGEYIEE VYAAYEQHKL ETLDSPKAGK WSGVEMTEEE  120
ALAEQQRMFA EARARMNNGI NIPKQSDSDR SVES*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1jfi_B2e-361213312133Transcription Regulator NC2 beta chain
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006841904.11e-101protein Dr1 homolog
RefseqXP_011622414.11e-101protein Dr1 homolog
RefseqXP_020521360.11e-101protein Dr1 homolog
SwissprotP495921e-83NC2B_ARATH; Protein Dr1 homolog
TrEMBLA0A1D1ZI591e-103A0A1D1ZI59_9ARAE; Protein Dr1 (Fragment)
STRINGERN035791e-101(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP57203549
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23090.41e-87nuclear factor Y, subunit B13
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]