PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo17G0023300
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family MYB_related
Protein Properties Length: 655aa    MW: 68906 Da    PI: 6.1508
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo17G0023300genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.62.2e-162468147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     r rWT+eE+ ++++a k++G   W +I +++g ++t+ q++s+ qk+
  Spipo17G0023300 24 RERWTEEEHNRFLEALKLHGRA-WQRIEEHIG-TKTAVQIRSHAQKF 68
                     78******************88.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466898.22E-161871IPR009057Homeodomain-like
PROSITE profilePS5129421.6141973IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.4E-82172IPR009057Homeodomain-like
TIGRFAMsTIGR015579.4E-162272IPR006447Myb domain, plants
SMARTSM007178.2E-132371IPR001005SANT/Myb domain
PfamPF002491.5E-132467IPR001005SANT/Myb domain
CDDcd001671.19E-92669No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0042754Biological Processnegative regulation of circadian rhythm
GO:0043433Biological Processnegative regulation of sequence-specific DNA binding transcription factor activity
GO:0046686Biological Processresponse to cadmium ion
GO:0048574Biological Processlong-day photoperiodism, flowering
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 655 aa     Download sequence    Send to blast
MEACSSGEDL IVKARKPYTI TKQRERWTEE EHNRFLEALK LHGRAWQRIE EHIGTKTAVQ  60
IRSHAQKFFS KKHAGPKSLK RTAQETSRDG KPPGPLSLFH EAPWPSTPSS SKSPGDPSCG  120
PPLKGPKSSP TESEPPPTDT GKSPVAPDKA DVDVGRHEDG PASIGAQIRL SQGRASGLVN  180
EELKGKISCN MPVSSVDGDS SGSPRRGVSE VCNHTGAHSN PSLVAIPSPS AVSSVHQPFP  240
AFPPPFSAQF CCIQDLYRSF SSIPSTFSGH LMSTLLQNPA AHAAASLAAS FWLTSDVEAS  300
TDSAPENFGG RQMSSPPPSM AAIAGATVAA ASAWWATHGL LPFCYPSFNS CFAFAPAPPT  360
SASPRTETAP ATRDGDNNEE VSDALEAKAS PLSSTDSNPS GKGGSPEERE ENAGGPPQNQ  420
LNSAPDSSGL EESVRGKGKN QVDRSSCGSN TPGSEVETDT VQATLDRGED EPKEDDLSVH  480
PQAVDPSGRR ARSSVGNVAS DPWREVSREG RLAFQALFSR EVLPQSFSPP QGEDGKEEKV  540
AAPAAAAAVA AAAAAAAAAA APSLPPPPEV NHDGRAHVFH AVEQDSSTRE EAAKDRSADI  600
GGPPPCEVGQ RRLKSHCTGF KPYKRCSMEA KETKAAPDED KCNKRIRLEG EASV*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00119DAPTransfer from AT1G01060Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB2108492e-58AB210849.1 Lemna gibba LgLHY H1 mRNA for LHY homologue1, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A1D1YXV31e-104A0A1D1YXV3_9ARAE; Protein LHY
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60313447
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01060.32e-37MYB_related family protein