PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Spipo17G0023200 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 191aa MW: 20361.7 Da PI: 6.5488 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 58.3 | 1.9e-18 | 41 | 90 | 3 | 56 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 y+GVr + +g+Wv+eIr+p++ + r++lg+f tae+Aa+a++ a++ ++ge Spipo17G0023200 41 YRGVRMRN-WGKWVSEIREPRK---KSRIWLGTFPTAEMAARAHDVAALTIKGE 90 9****998.**********843...6***********************99886 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 1.0E-37 | 40 | 103 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.103 | 40 | 97 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.9E-32 | 40 | 98 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 6.54E-22 | 40 | 98 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.3E-12 | 41 | 90 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.54E-30 | 41 | 99 | No hit | No description |
PRINTS | PR00367 | 6.0E-11 | 41 | 52 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.0E-11 | 63 | 79 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 191 aa Download sequence Send to blast |
MEEAVDGDGA AASPAAETTS SSSGSTAADG GAKGEKRRNL YRGVRMRNWG KWVSEIREPR 60 KKSRIWLGTF PTAEMAARAH DVAALTIKGE AAHLNFPELA SELPRPATAA PKDIQAAAAK 120 AAAATFVGRQ VEAEQRCRRE DPGSPGDDEL FDLPNILVGV SSGDWKNPSQ TVFYKNNYQF 180 DGPPDPIPKP * |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 3e-17 | 41 | 98 | 15 | 73 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00436 | DAP | Transfer from AT4G16750 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009401144.1 | 1e-53 | PREDICTED: ethylene-responsive transcription factor ERF039 | ||||
Swissprot | Q9M080 | 2e-44 | ERF43_ARATH; Ethylene-responsive transcription factor ERF043 | ||||
Swissprot | Q9SUK8 | 2e-44 | ERF39_ARATH; Ethylene-responsive transcription factor ERF039 | ||||
TrEMBL | A0A444E0E6 | 5e-51 | A0A444E0E6_ENSVE; Uncharacterized protein | ||||
STRING | XP_010264388.1 | 2e-48 | (Nelumbo nucifera) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP159 | 35 | 354 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G35700.1 | 2e-36 | ERF family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Spipo17G0023200 |
Publications ? help Back to Top | |||
---|---|---|---|
|