PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Spipo17G0022400 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
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Family | C2H2 | ||||||||
Protein Properties | Length: 273aa MW: 28352 Da PI: 8.4194 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.1 | 0.0012 | 5 | 27 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C ++Fs+ L H+r+H Spipo17G0022400 5 HTCKLCWRHFSSGRALGGHMRSH 27 79********************9 PP | |||||||
2 | zf-C2H2 | 12.5 | 0.00043 | 189 | 211 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C Cgk+F+++ L H +H Spipo17G0022400 189 HSCRTCGKVFRSHQALGGHRASH 211 79**************9999888 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50157 | 9.203 | 5 | 32 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 4.7E-8 | 5 | 27 | No hit | No description |
Pfam | PF13912 | 2.7E-6 | 5 | 29 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.12 | 5 | 27 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 7 | 27 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 4.7E-8 | 184 | 211 | No hit | No description |
Pfam | PF13912 | 4.6E-8 | 189 | 213 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.14 | 189 | 211 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.679 | 189 | 216 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 191 | 211 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 273 aa Download sequence Send to blast |
MTSKHTCKLC WRHFSSGRAL GGHMRSHAKP YIIAAAAVGS AALPSSSSSA THGGDRRPKQ 60 PVSGDGLQEK RKRSWRLTDP ELSSAVLGAA AASSSVVLPD WESDTESSKP PPPQKPGELE 120 PEPASSVSDT TPEEDVALCL VMLSRDAWCS VAAVAAAAAA AGVVEEVEMA ESKPAPRVRS 180 RTGGGRRKHS CRTCGKVFRS HQALGGHRAS HKQPRSCAAA PPPPPPYPTG ISGEEDTSPA 240 IIHECSVASV GGAPAAPAWR ITIDLNMPPP MD* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3518 | 33 | 77 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G60580.1 | 7e-17 | C2H2-like zinc finger protein |
Link Out ? help Back to Top | |
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Phytozome | Spipo17G0022400 |