PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Spipo17G0012400 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
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Family | bHLH | ||||||||
Protein Properties | Length: 214aa MW: 22247.7 Da PI: 8.0803 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 20.9 | 6.6e-07 | 94 | 138 | 6 | 55 |
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + + r RR+ri ++ eL +l+P ++++ ae+L A +Y+k Lq Spipo17G0012400 94 SVAARLRRRRISEKTRELAQLIPGG-----PRMTTAEMLLAARNYVKFLQ 138 667799*****************95.....5******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 12.551 | 88 | 137 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.18E-10 | 88 | 144 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 6.02E-7 | 89 | 136 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 1.2E-7 | 92 | 141 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 7.5E-9 | 94 | 143 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 214 aa Download sequence Send to blast |
MAVSLRTDWV PMQAPPSKAA TAAGAHGQPF HGDLLPHTFS DFPFLDDFLF DEALLGLLLD 60 DPPPPPALLP GSLAGATARP AVAPPTSACP TAQSVAARLR RRRISEKTRE LAQLIPGGPR 120 MTTAEMLLAA RNYVKFLQAQ LGLLGLAGSS SPGSPAEELT RRLVASPAVQ EKLAGVEKCL 180 FPCGAVEAMR ADPEIGSRPF ILRGLGGLTS PAG* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020268269.1 | 3e-33 | transcription factor bHLH53-like | ||||
TrEMBL | B9I0X7 | 6e-31 | B9I0X7_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0011s16100.1 | 1e-31 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6201 | 30 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G30670.1 | 2e-15 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Spipo17G0012400 |