PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo17G0010900
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family Trihelix
Protein Properties Length: 510aa    MW: 56896.2 Da    PI: 6.3179
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo17G0010900genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix46.21.2e-142523587
         trihelix 35 skkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87
                     ++k++e g++rs+k+Ckek+en++k+yk++k+g+ +r+++  + +++f+qlea
  Spipo17G0010900  2 ADKLAEMGYQRSAKKCKEKFENVHKYYKRTKDGRAGRQDG--KAYRFFTQLEA 52
                     7899********************************8555..56*******85 PP
2trihelix105.24.7e-33253338187
         trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                      rW+k ev+aLi++r  +e+r++++  k+plWee+++ m+  g++r+pk+Ckekwen+nk++kk+ke++kkr +e+s+tcpyf+ql+a
  Spipo17G0010900 253 RWPKAEVHALITLRIGLESRYQEAGPKGPLWEEIAAGMKGMGYSRTPKRCKEKWENINKYFKKVKESNKKR-PEDSKTCPYFHQLDA 338
                      8*********************************************************************8.99***********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138373.4E-10153No hitNo description
CDDcd122031.55E-27252317No hitNo description
PfamPF138374.6E-23252339No hitNo description
PROSITE profilePS500906.946252310IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.608.8E-4253309IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 510 aa     Download sequence    Send to blast
MADKLAEMGY QRSAKKCKEK FENVHKYYKR TKDGRAGRQD GKAYRFFTQL EALHSPAATG  60
ATSSAVSAYP AANTALNHSH SATLLDPSSR FPPSPLNSNL LPPIGGAWGG FSFSPDAFSS  120
SASESEEDTE ENLSGEQNKR KRASSGRRGH KMMAFFEGLM KQVIERQEAM QQRFLETIER  180
REQERMAREE DWKRQEMARV QREREIIAQE RALSASRDAS IVAFLQKMTG QDSAAPDVEG  240
SAGVNCTDPA SSRWPKAEVH ALITLRIGLE SRYQEAGPKG PLWEEIAAGM KGMGYSRTPK  300
RCKEKWENIN KYFKKVKESN KKRPEDSKTC PYFHQLDALY RRKLGQTRDE LECSSTPADP  360
LQPAAVEEEE TKDGGGGGGG GGDPDGDRAA VSNGRLSPAF FHHEQNYDSG SLKKPGDIVR  420
ELMDRQQQLQ HQQRRDMAME TYDKLQDPEG DSMDRDVDHD DDPDSEIRYV AQYQERPGVN  480
GASDCGASSS FMAMVRLSVE VLIDPMPFN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1297301TPKRC
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specific DNA sequence. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0252961e-61AC025296.10 Oryza sativa chromosome 10 BAC OSJNBa0076F20 genomic sequence, complete sequence.
GenBankAP0149661e-61AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence.
GenBankCP0126181e-61CP012618.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 10 sequence.
GenBankCT8305451e-61CT830545.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA218F06, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009382323.11e-123PREDICTED: trihelix transcription factor GTL1-like isoform X1
SwissprotQ391177e-92TGT2_ARATH; Trihelix transcription factor GT-2
TrEMBLM0RP321e-127M0RP32_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr11P03520_0011e-127(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60638175
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.14e-67Trihelix family protein