PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo17G0009400
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family Trihelix
Protein Properties Length: 519aa    MW: 55558.5 Da    PI: 9.6727
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo17G0009400genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix67.23.4e-21209298187
         trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.........rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85 
                      +Wt++e+ aLi+a+r ++ +lrrg+l++p+Weev++++         ++ g  ++++qC++k+e+l+kry+ +k++  +       ++++f+++
  Spipo17G0009400 209 CWTQEETGALIQAYRHKWYALRRGNLRAPHWEEVADAVasrcrhlyaAAPGNPKTAVQCRHKMEKLRKRYRSEKRRPHRT------SWVHFREM 296
                      8*********************************************9999************************999973......5******9 PP

         trihelix  86 ea 87 
                      +a
  Spipo17G0009400 297 DA 298
                      85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.3E-22208299No hitNo description
SMARTSM005956.4E-8217304IPR006578MADF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 519 aa     Download sequence    Send to blast
MLRLNSRRDP RKSADCPENG AADGGQVQKK MACPGKYGPK ATIIGSHPHT PAAGQPPPPP  60
PPPQSTNRPH RTAPRRPNTA AAVVLRQPTS PAGLERCPDP PCSLSSICRQ TLVPPTSGQP  120
PSPPSAPMAA AAAAAAAGPI SAGKVGGDPS LSPSPSPSRS SSKSPAADSS PGSELEPSSP  180
NSDPCDSKGF GGPPPGGRIS AARRLPPPCW TQEETGALIQ AYRHKWYALR RGNLRAPHWE  240
EVADAVASRC RHLYAAAPGN PKTAVQCRHK MEKLRKRYRS EKRRPHRTSW VHFREMDAME  300
MGTPGGGTGN NGGPTSAAKG APPPLPFLES FSGEDNGHDR SDEEEEDDDD DDDDDDEGLR  360
NGSVMPISAN GGKPIGDLRF QVPKVGRTKA NDWGNPKSHN AGGSNGCFKG FPGGTERKAA  420
PLAPAAMVHK RVEEKRRKER EPAALEEVAA AVKILGDGFL RAEEMKMEMA REMEKLRMDM  480
ELKRTEMVLE SQRWIIDAFI KGIWHGKKKK ARVSPDSH*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A1D1XM831e-105A0A1D1XM83_9ARAE; Uncharacterized protein At4g22160
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56893250
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44730.12e-35Trihelix family protein