PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo17G0008500
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family ERF
Protein Properties Length: 300aa    MW: 31576.1 Da    PI: 4.9086
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo17G0008500genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.21.2e-19144194255
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      gy+GVr+++ +g+++AeIrdp+ +g   r++lg+++ta eAa+a+++a+ +++g
  Spipo17G0008500 144 GYRGVRRRP-WGKFAAEIRDPKRRG--SRVWLGTYDTAVEAARAYDRAAFQMRG 194
                      8********.**********96554..*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541716.54E-23144203IPR016177DNA-binding domain
PfamPF008472.7E-14144194IPR001471AP2/ERF domain
PROSITE profilePS5103224.421144202IPR001471AP2/ERF domain
SMARTSM003807.3E-37144208IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.5E-32144203IPR001471AP2/ERF domain
CDDcd000181.17E-28145203No hitNo description
PRINTSPR003671.9E-13145156IPR001471AP2/ERF domain
PRINTSPR003671.9E-13184204IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MAGDDEIFST LNLIEHHLLG DAFLSPGPAP SVGATSSFFL APLPAATNSG LAGSSYSYAA  60
SSSTSGGSPS VAGDAVDDFL EEDPFGESKS NSASSSSSIS SGKPSLIISR PAVPKVEWTA  120
AAPGEYYEEA APPVGGSDLG DCRGYRGVRR RPWGKFAAEI RDPKRRGSRV WLGTYDTAVE  180
AARAYDRAAF QMRGSKAILN FPNEVGSTAD WTPPPPPPMR EEPPSAVAAR PPKRERSPDC  240
EVEVLCHAKR ERYAAEAPAS QPPAPASWSS AALWSSGENR DIFNLPPLSP IGYPQLLVI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A6e-27135204474Ethylene-responsive transcription factor ERF096
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP10337465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51190.14e-24ERF family protein