PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Spipo17G0003700

Organism

Spirodela polyrhiza

Taxonomic ID

29656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela

Family

MYB

Protein Properties

Length: 175aa MW: 20198.7 Da PI: 11.035

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Spipo17G0003700	genome	MIPS/IBIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	57.2	3.8e-18	4	51	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd ll ++v q+G g+W++I+++ g++R++k+c++rw++yl Spipo17G0003700 4 KGAWTPEEDALLQRCVLQYGEGQWHLIPERAGLRRCRKSCRLRWLNYL 51 79********************************************97 PP
2	Myb_DNA-binding	42.6	1.4e-13	57	101	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++ ++E +l+++++++lG+ W++Ia +++ gRt++++k++w++ Spipo17G0003700 57 RGAFQEDEVDLIIRLHRLLGNI-WSLIAGRIP-GRTANDIKNYWNSC 101 899***************99.*****.*********975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	27.436	1	55	IPR017930	Myb domain
SuperFamily	SSF46689	8.8E-27	2	98	IPR009057	Homeodomain-like
SMART	SM00717	7.6E-15	3	53	IPR001005	SANT/Myb domain
Pfam	PF00249	7.8E-17	4	51	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	9.7E-23	5	58	IPR009057	Homeodomain-like
CDD	cd00167	8.00E-11	6	51	No hit	No description
SMART	SM00717	8.2E-10	56	104	IPR001005	SANT/Myb domain
PROSITE profile	PS51294	16.625	56	106	IPR017930	Myb domain
Pfam	PF00249	1.1E-12	57	101	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.9E-21	59	105	IPR009057	Homeodomain-like
CDD	cd00167	4.21E-8	62	99	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 175 aa Download sequence Send to blast
KIRKGAWTPE EDALLQRCVL QYGEGQWHLI PERAGLRRCR KSCRLRWLNY LKPSIKRGAF 60 QEDEVDLIIR LHRLLGNIWS LIAGRIPGRT ANDIKNYWNS CLCKKVGAQG KVARKIYKRS 120 TIGMASETYN SCIWGRAMLS PRLAHSPEAI LGCRHEIFRP RPRTTKFSGK QKQAL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	5e-24	4	108	7	110	B-MYB
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269\|PubMed:15361138}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010062250.1	2e-56	PREDICTED: transcription factor MYB113
Swissprot	Q9FNV9	2e-51	MY113_ARATH; Transcription factor MYB113
TrEMBL	A0A1P8DVI5	2e-57	A0A1P8DVI5_ANTAD; MYB2
STRING	XP_010062250.1	7e-56	(Eucalyptus grandis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66370.1	7e-54	myb domain protein 113

Link Out ? help Back to Top
Phytozome	Spipo17G0003700

Publications ? help Back to Top
Li T, et al. Jasmonic acid enhancement of anthocyanin accumulation is dependent on phytochrome A signaling pathway under far-red light in Arabidopsis. Biochem. Biophys. Res. Commun., 2014. 454(1): p. 78-83 [PMID:25450360] Mondal SK,Roy S Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis. J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601 [PMID:28490275]