PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo16G0039400
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family MYB_related
Protein Properties Length: 415aa    MW: 45167.6 Da    PI: 8.0557
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo16G0039400genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.73e-09296343448
                      S-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                      WT  E  +l+++v ++G g+W++I r +     +Rt  ++k++w+++l
  Spipo16G0039400 296 WTLAEVMKLIEGVSRYGVGRWTKIKRLLFsssGHRTSVDLKDKWRNLL 343
                      ****************************99999*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.9E-13285346IPR009057Homeodomain-like
PROSITE profilePS5129415.377288347IPR017930Myb domain
SuperFamilySSF466891.79E-16290348IPR009057Homeodomain-like
SMARTSM007171.1E-10292345IPR001005SANT/Myb domain
CDDcd116602.54E-21296344No hitNo description
PfamPF002493.2E-7296343IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 415 aa     Download sequence    Send to blast
MPNGMASMMI FFCRIGISTT EAAQNQGQVL DSMLEKHDEQ ALHVIGNISN ACPGYLSESG  60
FAERVSHLDY SIDLRPHGAF DHDALHPDAV AAHGLHDALR STYGRGTSIL DKESLKQQIL  120
VGLSSLIDLD HTSGDLKKML SEDENADILV LPSNSLSGGK AAVCTSVDEG DGEVVAMNSD  180
ASGFGLAEVE GGDSARKRTR RPTRRYIEES SEAKCTLCTE RQRFPRTSPQ DKTSRVRDHD  240
AEDFKASCNW HFGPEGTPGR GPSALSDSEN DDGAFGSPAA AQGTKCVARR KHHRLWTLAE  300
VMKLIEGVSR YGVGRWTKIK RLLFSSSGHR TSVDLKDKWR NLLRASGAHS RSKDEIAAKR  360
KPLSGLVPQS VLRRVRDLAA IYPYPRERAS REPLPAALSP SPGGQHLRCS WSSS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A1D1Y2X02e-91A0A1D1Y2X0_9ARAE; Telomere repeat-binding protein 6
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP69663341
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.16e-29TRF-like 6