PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Spipo16G0032100

Organism

Spirodela polyrhiza

Taxonomic ID

29656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela

Family

TCP

Protein Properties

Length: 288aa MW: 29813.1 Da PI: 9.6304

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Spipo16G0032100	genome	MIPS/IBIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	124.5	1.1e-38	43	135	2	94
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec..eaesssssasnsssg..kaa 91 a+kk ++ ++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tg+++++as++ + + s+++n++ + + Spipo16G0032100 43 AAKKPPSRDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGSGTTPASFStvS--AAASQTNNQNCHpsS-- 132 789*************************************************************99999888443..333333333333221.. PP TCP 92 ksa 94 +s+ Spipo16G0032100 133 SSS 135 221 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51369	27.528	49	103	IPR017887	Transcription factor TCP subgroup
Pfam	PF03634	6.6E-32	49	134	IPR005333	Transcription factor, TCP

Sequence ? help Back to Top
Protein Sequence Length: 288 aa Download sequence Send to blast
MDGGTHGVGF AFTDSAQIQQ QQQHYQGDVG ETGQGGSNGG AVAAKKPPSR DRHSKVDGRG 60 RRIRMPIICA ARVFQLTREL GHKSDGQTIE WLLRQAEPSI IAATGSGTTP ASFSTVSAAA 120 SQTNNQNCHP SSSSSLSTFS SLDNKLGSTH PRHLPQTLPA PFILGKRLRV GDEQDKEEND 180 GVGGGGGGGG SFGTGIGAAG GFWAVPARAS EYGQMWSFAT PEIMAPPRAA AAAAVTGRFA 240 AAHPGEDVSA VRVGNYLPMA QGHLNLLASL STPPAAAISR RREERPH*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK240798	2e-59	AK240798.1 Oryza sativa Japonica Group cDNA, clone: J065002G04, full insert sequence.
GenBank	AP004776	2e-59	AP004776.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0452F04.
GenBank	AP014958	2e-59	AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBank	CP012610	2e-59	CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020682551.1	4e-87	transcription factor TCP7
Swissprot	Q9FMX2	2e-63	TCP7_ARATH; Transcription factor TCP7
TrEMBL	A0A2I0WDK5	3e-85	A0A2I0WDK5_9ASPA; Transcription factor TCP7
STRING	XP_008803023.1	4e-79	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1941	33	100

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G23280.1	4e-56	TCP family protein

Link Out ? help Back to Top
Phytozome	Spipo16G0032100