PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo16G0014200
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family B3
Protein Properties Length: 267aa    MW: 29778.8 Da    PI: 9.8144
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo16G0014200genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3986.1e-317110198
                      EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.S CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.s 88 
                      f+kv tpsdv+k++rlv+pk++ae++     + +e++  l +ed++g+ W+++++y+++s++yv+tkGW++Fvk+++L++gD+v F +  g+  
  Spipo16G0014200   7 FDKVVTPSDVGKLNRLVIPKQHAERYfpldASTNEKGLLLNFEDPTGKPWRFRYSYWNSSQSYVMTKGWSRFVKEKRLDAGDTVSFGRGvGEaG 100
                      89***************************966777899************************************************95546666 PP

                      EE..EEEEE- CS
               B3  89 efelvvkvfr 98 
                      + +l++ + r
  Spipo16G0014200 101 RHRLFIDWKR 110
                      6666666655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.7E-402111IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.66E-304111IPR015300DNA-binding pseudobarrel domain
CDDcd100175.50E-26592No hitNo description
PROSITE profilePS5086314.1287110IPR003340B3 DNA binding domain
SMARTSM010196.2E-217112IPR003340B3 DNA binding domain
PfamPF023627.3E-287111IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009908Biological Processflower development
GO:0048366Biological Processleaf development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MEKEHMFDKV VTPSDVGKLN RLVIPKQHAE RYFPLDASTN EKGLLLNFED PTGKPWRFRY  60
SYWNSSQSYV MTKGWSRFVK EKRLDAGDTV SFGRGVGEAG RHRLFIDWKR RPGGLHFPRL  120
PLPGYHHHHR RELSSYVMPF PRSAVPLTSL VVPPLPTSGA SAMGLYDRHR HVGYGYNPYM  180
LYLRSEVSPS QIGVQLGIRG SGEESLAIPT VQGKAASKTV RLFGVDLDCS TSKDDSDGNS  240
AELGHPPLAS LQLKLGRSEM ADSLDI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A9e-6621123114B3 domain-containing transcription factor NGA1
5os9_B9e-6621123114B3 domain-containing transcription factor NGA1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3666018e-99AK366601.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2044K15.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017697228.16e-83B3 domain-containing protein Os02g0683500-like
SwissprotQ8LMR92e-76Y3209_ORYSJ; B3 domain-containing protein Os03g0120900
TrEMBLA0A1D1ZE213e-91A0A1D1ZE21_9ARAE; B3 domain-containing protein Os03g0120900
STRINGXP_008783755.13e-83(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58337168
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46870.13e-69B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]