PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Spipo15G0046400 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
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Family | AP2 | ||||||||
Protein Properties | Length: 478aa MW: 52725.4 Da PI: 8.608 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 49.3 | 1.2e-15 | 165 | 224 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++gr++A+++d + g ++ ++++lg ++ +e+Aa+a++ a++k++g Spipo15G0046400 165 SQYRGVTRHRWTGRYEAHLWDnSCRkEGqtRKgRQVYLGGYDKEEKAARAYDLAALKYWG 224 78*******************655454478446*************************98 PP | |||||||
2 | AP2 | 46.2 | 1.1e-14 | 269 | 318 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g Spipo15G0046400 269 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 318 9***************988532...5************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 3.41E-21 | 165 | 234 | No hit | No description |
Pfam | PF00847 | 4.1E-12 | 165 | 224 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.27E-17 | 165 | 234 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 19.177 | 166 | 232 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.3E-16 | 166 | 234 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.0E-29 | 166 | 238 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.3E-6 | 167 | 178 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 9.15E-18 | 267 | 328 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 5.65E-24 | 267 | 328 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 2.7E-18 | 268 | 326 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.177 | 268 | 326 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 7.5E-34 | 268 | 332 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.9E-9 | 269 | 318 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.3E-6 | 308 | 328 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 478 aa Download sequence Send to blast |
MNMPATFTGG HMDREAGENM QGHFSLYQSF HQPSHTFDET HGFRPQFFVP AVHVQGGGAH 60 PVPIPETLYG PGFDGASSIA GFKSWLRQSN QYLPEKMMPD SDKCNYQSLS LTMSNSIQMD 120 CAGTAPTSAS SHQPITDDRK RQIGKSGSRE ALPRKSIETF GQRTSQYRGV TRHRWTGRYE 180 AHLWDNSCRK EGQTRKGRQV YLGGYDKEEK AARAYDLAAL KYWGPTTHIN FPLSAYEKEV 240 EEMKNMTRQE FVAYLRRNSS GFSRGASMYR GVTRHHQHGR WQARIGRVAG NKDLYLGTFS 300 TQEEAAEAYD IAAIKFRGVN AVTNFDISRY DVKRICSSTT LITGDLAKRS PRGDVPQSVD 360 DALASSTLPR DDEAPTTNKA DLPSQATAAA SPMSNSSSSM EKRESPRNSN SQQSDCCDLS 420 QAFYYPSHGS ADCTASTSNN SSSAAPNVNW MAAAAAASRP AGFPVVHQLP MFALWND* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010936939.1 | 0.0 | AP2-like ethylene-responsive transcription factor AIL7 isoform X1 | ||||
Swissprot | Q1PFE1 | 1e-141 | AIL1_ARATH; AP2-like ethylene-responsive transcription factor AIL1 | ||||
TrEMBL | A0A2H3X2R7 | 0.0 | A0A2H3X2R7_PHODC; AP2-like ethylene-responsive transcription factor ANT | ||||
STRING | XP_008777425.1 | 0.0 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP948 | 38 | 133 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72570.1 | 1e-138 | AP2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Spipo15G0046400 |
Publications ? help Back to Top | |||
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