PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Spipo15G0040900 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
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Family | C2H2 | ||||||||
Protein Properties | Length: 177aa MW: 19638.3 Da PI: 9.7167 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 21.9 | 4.6e-07 | 58 | 80 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C++Cg+ F r nL+ H r+H Spipo15G0040900 58 YVCEICGQGFQRDQNLQMHRRRH 80 9*********************9 PP | |||||||
2 | zf-C2H2 | 18.6 | 5.1e-06 | 135 | 157 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k + +s++k H++t+ Spipo15G0040900 135 WVCGKCSKAYAVQSDYKAHLKTC 157 58*******************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.3E-6 | 57 | 80 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 7.1E-6 | 57 | 80 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.0032 | 58 | 80 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 11.635 | 58 | 80 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 60 | 80 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 160 | 99 | 129 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 9.8E-5 | 122 | 156 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 1.3E-6 | 130 | 155 | No hit | No description |
SMART | SM00355 | 87 | 135 | 162 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009630 | Biological Process | gravitropism | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0010601 | Biological Process | positive regulation of auxin biosynthetic process | ||||
GO:0048444 | Biological Process | floral organ morphogenesis | ||||
GO:2000012 | Biological Process | regulation of auxin polar transport | ||||
GO:2000904 | Biological Process | regulation of starch metabolic process | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043621 | Molecular Function | protein self-association | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 177 aa Download sequence Send to blast |
SSSVPPQPFA CLDNASTNPT NGGGGVGSKR KRRPAGTPDP DAEVVSLSPK TLLESDRYVC 60 EICGQGFQRD QNLQMHRRRH KVPWKLLKRE TPEVKKRVFV CPEPSCLHHD PCHALGDLVG 120 IKKHYRRKHS NHKQWVCGKC SKAYAVQSDY KAHLKTCGTR GHSCDCGRVF SSSEAY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 1e-13 | 132 | 176 | 4 | 48 | Zinc finger protein JACKDAW |
5b3h_F | 1e-13 | 132 | 176 | 4 | 48 | Zinc finger protein JACKDAW |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor regulating starch metabolism by binding directly to the promoter of QQS (PubMed:21556057). The IDD14beta isoform attenuates the transcription factor activity by competitively forming heterodimers with reduced DNA-binding capacity(PubMed:21556057). Regulates lateral organ morphogenesis and gravitropic responses (PubMed:24039602). Has a redundant role with IDD16 in directing leaf and floral organ morphogenesis (PubMed:24039602). Involved in the establishment of auxin gradients through the regulation of auxin biosynthesis and transport (PubMed:24039602). {ECO:0000269|PubMed:21556057, ECO:0000269|PubMed:24039602}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not regulated by auxin. {ECO:0000269|PubMed:24039602}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_026402877.1 | 1e-106 | protein SHOOT GRAVITROPISM 5-like | ||||
Swissprot | Q9C9X7 | 5e-99 | IDD14_ARATH; Protein indeterminate-domain 14 | ||||
TrEMBL | A0A1D1ZFR9 | 1e-108 | A0A1D1ZFR9_9ARAE; Zinc finger protein MAGPIE (Fragment) | ||||
TrEMBL | A0A443PYR6 | 1e-108 | A0A443PYR6_9MAGN; Protein indeterminate-domain-containing protein | ||||
STRING | Aquca_002_01252.1 | 1e-105 | (Aquilegia coerulea) | ||||
STRING | XP_009360028.1 | 1e-104 | (Pyrus x bretschneideri) | ||||
STRING | Gorai.005G134600.1 | 1e-105 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1051 | 38 | 124 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G01940.1 | 1e-100 | C2H2-like zinc finger protein |
Link Out ? help Back to Top | |
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Phytozome | Spipo15G0040900 |
Publications ? help Back to Top | |||
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