PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo15G0031700
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family CO-like
Protein Properties Length: 437aa    MW: 46086.4 Da    PI: 5.2579
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo15G0031700genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box26.11.8e-081861340
         zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                     +r C+ + + +++++C  ++ +lC++C +  H+       H++v
  Spipo15G0031700 18 ARACDSCLRRRARWYCAADDAFLCQSCDTLVHSAnplarrHERV 61
                     578*****************************657888888876 PP
2CCT69.86.8e-24373416144
              CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                      Rea+++RY+eKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk+a
  Spipo15G0031700 373 REARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKSA 416
                      9*****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.8361663IPR000315B-box-type zinc finger
SMARTSM003365.6E-111663IPR000315B-box-type zinc finger
PfamPF006439.6E-81861IPR000315B-box-type zinc finger
CDDcd000215.98E-101963No hitNo description
PROSITE profilePS5101716.112373415IPR010402CCT domain
PfamPF062031.6E-18373415IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0016020Cellular Componentmembrane
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 437 aa     Download sequence    Send to blast
MTTLSEKRSA NAVGGKTARA CDSCLRRRAR WYCAADDAFL CQSCDTLVHS ANPLARRHER  60
VRLKTASSSS PLPPFKQAAL PTAPSWHQGF KRKARTPRAR HTAMAPAAAK SEPLVPDFEA  120
SSLDETAEEE GEEEEEEQLL YRVPIFDPVL AEFCSSHVSD DSAATSSGEA KPAMNPSPKY  180
ASSPGGLVNA LPGFSPSDVD MGEFSADVES LLGRVLDEDA FSMEGLGLME AGGDGADCCF  240
AGGGYVKLET SDGDDLNGDT LDLNFECGSP APAPAKLAAP PAMGASVKRR RIALRLDYEG  300
VIDAWSSTQG CSSPWTDGER PQVNPDECLP DFMGMWGEAP GLAYGGEMSG GGDGGPGGSG  360
MGGAQGAAGD GGREARVSRY REKRRTRLFS KKIRYEVRKL NAEKRPRMKG RFVKSASFGG  420
SAGAPAGVAP QPAFAF*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1287291KRRRI
2383399RRTRLFSKKIRYEVRKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002282578.11e-132PREDICTED: zinc finger protein CONSTANS-LIKE 16
TrEMBLD7T9491e-130D7T949_VITVI; Uncharacterized protein
STRINGVIT_01s0011g03520.t011e-131(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32833058
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73870.12e-51B-box type zinc finger protein with CCT domain