PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Spipo15G0028000 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
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Family | NAC | ||||||||
Protein Properties | Length: 399aa MW: 44398.8 Da PI: 4.5887 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 105.3 | 7.9e-33 | 14 | 153 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk.....leleev.ikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk.....sgy 82 lp+G++F+P+d+el+++ L+k +g++ ++++ ++e +i++++P++Lp vk++ + +fF+++ k+y+tg+rk+r+++ + + Spipo15G0028000 14 LPRGVKFDPSDQELLWHLLAKVGKGDPkphpfIDEFIPtLEEDdGICYAHPQKLP-GVKQDGTVSHFFHRTFKAYNTGTRKRRKIQgddlgDVR 106 799************888877777777776553333333555546**********.677888999******************86656665889 PP NAM 83 WkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 W++tgk+k+v++ +g++ g+kk++v+y + +k+ekt Wvmh+y+l Spipo15G0028000 107 WHKTGKTKPVMV-DGTHQGCKKIMVLYmsPVKGEKPEKTGWVMHQYHL 153 ************.9999**********6523666677*********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 6.41E-38 | 5 | 172 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 29.949 | 14 | 172 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.6E-14 | 15 | 153 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000077 | Biological Process | DNA damage checkpoint | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010332 | Biological Process | response to gamma radiation | ||||
GO:0040020 | Biological Process | regulation of meiotic nuclear division | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 399 aa Download sequence Send to blast |
MLIVTDVVKE WPGLPRGVKF DPSDQELLWH LLAKVGKGDP KPHPFIDEFI PTLEEDDGIC 60 YAHPQKLPGV KQDGTVSHFF HRTFKAYNTG TRKRRKIQGD DLGDVRWHKT GKTKPVMVDG 120 THQGCKKIMV LYMSPVKGEK PEKTGWVMHQ YHLGIDEDEK DGELVVSKLF YQQQCKPNER 180 NDAELPAALL EGPRKEAEPI PCPKSATPDP PAEKRCRDPG FMHSPAQVTA DDEVQLKTVK 240 DCVQPDCEEI DDHGSLAMVE EKNGTENGDV ENADRSDGGK INHQADDATV EDPKWWDGES 300 QFLLDSQQLA EGMALCEEFL QSQSSCEDGA AKPSKPCLAD YAKMGVENLK KDLEECQNIS 360 GLDLANIDLD TPPDMRLSQL EFGSQDSFLA WGYAKVAD* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor regulating the transcriptional activation response to gamma irradiation (PubMed:19549833). Required for stem-cell death induced by UVB or by gamma irradiation (PubMed:20634150). Not required for ATM activation, but participates in pathways governed by both ATM and ATR sensor kinases (PubMed:19549833). Involved in DNA damage response (DDR) system that regulates cell cycle arrest (PubMed:24399300). Functional homolog of animal p53 (PubMed:24736489). Regulates SMR5 and SMR7 transcription (PubMed:24399300). Regulates DNA repair and cytokinin signaling separately and plays a key role in controlling lateral root formation under genotoxic stress. {ECO:0000269|PubMed:19549833, ECO:0000269|PubMed:20634150, ECO:0000269|PubMed:24399300, ECO:0000305|PubMed:24736489}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not induced by zeocin or ionizing radiation treatment. {ECO:0000269|PubMed:23907539}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010932619.1 | 1e-171 | SUPPRESSOR OF GAMMA RESPONSE 1 | ||||
Swissprot | Q6NQK2 | 1e-136 | NAC8_ARATH; SUPPRESSOR OF GAMMA RESPONSE 1 | ||||
TrEMBL | A0A1D1Z030 | 0.0 | A0A1D1Z030_9ARAE; NAC domain-containing protein 8 | ||||
STRING | XP_008800749.1 | 1e-166 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6785 | 36 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G25580.1 | 1e-138 | NAC family protein |
Link Out ? help Back to Top | |
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Phytozome | Spipo15G0028000 |